Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NPAS3Q8IXF0 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NPAS3Q8IXF0 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NPAS3Q8IXF0 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
NPAS3Q8IXF0 AC009949.1-201ENST00000623048 1830 ntBASIC18.19■□□□□ 0.5
NPAS3Q8IXF0 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 AC093677.2-201ENST00000600169 1863 ntBASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 CD82-202ENST00000342935 967 ntTSL 5 BASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 MRPL20P1-201ENST00000400819 433 ntBASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 STK19B-204ENST00000512515 211 ntBASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 CD63-210ENST00000550776 870 ntTSL 5 BASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 LINC02084-201ENST00000606069 1096 ntBASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 AC116407.2-201ENST00000613639 860 ntBASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 BX276092.7-203ENST00000637198 1536 ntBASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
NPAS3Q8IXF0 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 PTCHD3P3-201ENST00000403073 906 ntBASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 CNN2P11-201ENST00000429351 262 ntBASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 AC010507.1-201ENST00000633895 436 ntBASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 ELL2P1-201ENST00000413990 1906 ntBASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 AC097637.2-201ENST00000624096 1997 ntBASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 AC009336.1-201ENST00000608941 1553 ntBASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
NPAS3Q8IXF0 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NPAS3Q8IXF0 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NPAS3Q8IXF0 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NPAS3Q8IXF0 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
NPAS3Q8IXF0 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
NPAS3Q8IXF0 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NPAS3Q8IXF0 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NPAS3Q8IXF0 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NPAS3Q8IXF0 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NPAS3Q8IXF0 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NPAS3Q8IXF0 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
NPAS3Q8IXF0 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
NPAS3Q8IXF0 ATP6V0CP3-201ENST00000417255 467 ntBASIC18.16■□□□□ 0.5
NPAS3Q8IXF0 DDX43P3-201ENST00000441064 443 ntBASIC18.16■□□□□ 0.5
NPAS3Q8IXF0 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
NPAS3Q8IXF0 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC18.16■□□□□ 0.5
NPAS3Q8IXF0 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC18.16■□□□□ 0.5
NPAS3Q8IXF0 IGHV3-52-201ENST00000519770 353 ntBASIC18.16■□□□□ 0.5
NPAS3Q8IXF0 RFPL4AP1-201ENST00000530883 850 ntBASIC18.16■□□□□ 0.5
NPAS3Q8IXF0 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms