Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VRK3Q8IV63 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VRK3Q8IV63 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VRK3Q8IV63 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.23■□□□□ 0.35
VRK3Q8IV63 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.23■□□□□ 0.35
VRK3Q8IV63 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VRK3Q8IV63 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC17.23■□□□□ 0.35
VRK3Q8IV63 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VRK3Q8IV63 LYSMD4-203ENST00000378904 2122 ntBASIC17.23■□□□□ 0.35
VRK3Q8IV63 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VRK3Q8IV63 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.23■□□□□ 0.35
VRK3Q8IV63 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.23■□□□□ 0.35
VRK3Q8IV63 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VRK3Q8IV63 EML3-217ENST00000531557 2509 ntTSL 5 BASIC17.22■□□□□ 0.35
VRK3Q8IV63 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VRK3Q8IV63 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC17.22■□□□□ 0.35
VRK3Q8IV63 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC17.22■□□□□ 0.35
VRK3Q8IV63 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VRK3Q8IV63 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VRK3Q8IV63 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.22■□□□□ 0.35
VRK3Q8IV63 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.22■□□□□ 0.35
VRK3Q8IV63 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VRK3Q8IV63 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.22■□□□□ 0.35
VRK3Q8IV63 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
VRK3Q8IV63 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VRK3Q8IV63 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
VRK3Q8IV63 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VRK3Q8IV63 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
VRK3Q8IV63 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.22■□□□□ 0.35
VRK3Q8IV63 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
VRK3Q8IV63 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VRK3Q8IV63 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
VRK3Q8IV63 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC17.22■□□□□ 0.35
VRK3Q8IV63 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC17.22■□□□□ 0.35
VRK3Q8IV63 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC17.22■□□□□ 0.35
VRK3Q8IV63 AC002558.1-201ENST00000488906 803 ntBASIC17.22■□□□□ 0.35
VRK3Q8IV63 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VRK3Q8IV63 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC17.22■□□□□ 0.35
VRK3Q8IV63 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC17.22■□□□□ 0.35
VRK3Q8IV63 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VRK3Q8IV63 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC17.22■□□□□ 0.35
VRK3Q8IV63 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC17.22■□□□□ 0.35
VRK3Q8IV63 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
VRK3Q8IV63 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.22■□□□□ 0.35
VRK3Q8IV63 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
VRK3Q8IV63 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.22■□□□□ 0.35
VRK3Q8IV63 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VRK3Q8IV63 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VRK3Q8IV63 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VRK3Q8IV63 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VRK3Q8IV63 AC141586.5-201ENST00000624546 2050 ntBASIC17.22■□□□□ 0.35
VRK3Q8IV63 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VRK3Q8IV63 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VRK3Q8IV63 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.21■□□□□ 0.35
VRK3Q8IV63 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
VRK3Q8IV63 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
VRK3Q8IV63 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VRK3Q8IV63 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VRK3Q8IV63 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VRK3Q8IV63 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
VRK3Q8IV63 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.21■□□□□ 0.35
VRK3Q8IV63 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
VRK3Q8IV63 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
VRK3Q8IV63 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
VRK3Q8IV63 CTNS-203ENST00000399306 803 ntTSL 3 BASIC17.21■□□□□ 0.35
VRK3Q8IV63 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC17.21■□□□□ 0.35
VRK3Q8IV63 TSPY19P-201ENST00000418461 509 ntBASIC17.21■□□□□ 0.35
VRK3Q8IV63 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC17.21■□□□□ 0.35
VRK3Q8IV63 AC103564.2-201ENST00000432853 1299 ntBASIC17.21■□□□□ 0.35
VRK3Q8IV63 TSPY18P-201ENST00000441642 509 ntBASIC17.21■□□□□ 0.35
VRK3Q8IV63 KRT16P4-201ENST00000453883 522 ntBASIC17.21■□□□□ 0.35
VRK3Q8IV63 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.21■□□□□ 0.35
VRK3Q8IV63 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.21■□□□□ 0.35
VRK3Q8IV63 KRT18P31-201ENST00000506277 1292 ntBASIC17.21■□□□□ 0.35
VRK3Q8IV63 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC17.21■□□□□ 0.35
VRK3Q8IV63 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.21■□□□□ 0.35
VRK3Q8IV63 AL591684.3-201ENST00000605187 298 ntBASIC17.21■□□□□ 0.35
VRK3Q8IV63 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC17.21■□□□□ 0.35
VRK3Q8IV63 AD001527.2-201ENST00000622994 785 ntBASIC17.21■□□□□ 0.35
VRK3Q8IV63 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC17.21■□□□□ 0.35
VRK3Q8IV63 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
VRK3Q8IV63 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VRK3Q8IV63 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
VRK3Q8IV63 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VRK3Q8IV63 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.21■□□□□ 0.34
VRK3Q8IV63 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
VRK3Q8IV63 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
VRK3Q8IV63 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.34
VRK3Q8IV63 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC17.21■□□□□ 0.34
VRK3Q8IV63 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VRK3Q8IV63 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VRK3Q8IV63 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
VRK3Q8IV63 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
VRK3Q8IV63 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VRK3Q8IV63 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VRK3Q8IV63 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.2■□□□□ 0.34
VRK3Q8IV63 AL353593.2-201ENST00000602529 1483 ntBASIC17.2■□□□□ 0.34
VRK3Q8IV63 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
VRK3Q8IV63 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.2■□□□□ 0.34
VRK3Q8IV63 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms