Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC40Q4G0X9 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC40Q4G0X9 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC40Q4G0X9 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC40Q4G0X9 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC40Q4G0X9 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC40Q4G0X9 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC40Q4G0X9 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC40Q4G0X9 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC40Q4G0X9 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC40Q4G0X9 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC40Q4G0X9 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CCDC40Q4G0X9 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC40Q4G0X9 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC40Q4G0X9 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC19.44■□□□□ 0.7
CCDC40Q4G0X9 TMPOP1-202ENST00000424642 1267 ntBASIC19.44■□□□□ 0.7
CCDC40Q4G0X9 SPDYE13P-201ENST00000445314 798 ntBASIC19.44■□□□□ 0.7
CCDC40Q4G0X9 CLN6-204ENST00000564752 900 ntTSL 3 BASIC19.44■□□□□ 0.7
CCDC40Q4G0X9 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC40Q4G0X9 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
CCDC40Q4G0X9 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC40Q4G0X9 BANP-227ENST00000626016 2144 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC40Q4G0X9 CLN6-214ENST00000636314 442 ntTSL 3 BASIC19.44■□□□□ 0.7
CCDC40Q4G0X9 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC40Q4G0X9 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
CCDC40Q4G0X9 AC108860.2-201ENST00000562760 2183 ntBASIC19.44■□□□□ 0.7
CCDC40Q4G0X9 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC40Q4G0X9 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC19.44■□□□□ 0.7
CCDC40Q4G0X9 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC40Q4G0X9 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC40Q4G0X9 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC40Q4G0X9 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC40Q4G0X9 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC40Q4G0X9 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC40Q4G0X9 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
CCDC40Q4G0X9 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC40Q4G0X9 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC40Q4G0X9 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC40Q4G0X9 BOC-212ENST00000485230 2173 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC40Q4G0X9 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC40Q4G0X9 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
CCDC40Q4G0X9 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC40Q4G0X9 BX276092.7-203ENST00000637198 1536 ntBASIC19.43■□□□□ 0.7
CCDC40Q4G0X9 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC40Q4G0X9 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC40Q4G0X9 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC40Q4G0X9 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC40Q4G0X9 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC40Q4G0X9 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC40Q4G0X9 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC40Q4G0X9 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC19.43■□□□□ 0.7
CCDC40Q4G0X9 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC40Q4G0X9 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC40Q4G0X9 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC40Q4G0X9 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
CCDC40Q4G0X9 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC40Q4G0X9 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC40Q4G0X9 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC40Q4G0X9 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC40Q4G0X9 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC40Q4G0X9 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC40Q4G0X9 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC40Q4G0X9 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC40Q4G0X9 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC19.42■□□□□ 0.7
CCDC40Q4G0X9 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC40Q4G0X9 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
CCDC40Q4G0X9 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC40Q4G0X9 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
CCDC40Q4G0X9 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC40Q4G0X9 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC40Q4G0X9 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CCDC40Q4G0X9 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC40Q4G0X9 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC40Q4G0X9 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC40Q4G0X9 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC40Q4G0X9 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC40Q4G0X9 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC40Q4G0X9 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC40Q4G0X9 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC40Q4G0X9 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC40Q4G0X9 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC40Q4G0X9 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
CCDC40Q4G0X9 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
CCDC40Q4G0X9 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC40Q4G0X9 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CCDC40Q4G0X9 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC40Q4G0X9 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
CCDC40Q4G0X9 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC40Q4G0X9 BAALC-202ENST00000306391 243 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC40Q4G0X9 BAALC-204ENST00000330955 222 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC40Q4G0X9 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
CCDC40Q4G0X9 AL645929.1-201ENST00000420084 975 ntBASIC19.41■□□□□ 0.7
CCDC40Q4G0X9 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC19.41■□□□□ 0.7
CCDC40Q4G0X9 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC40Q4G0X9 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC19.41■□□□□ 0.7
CCDC40Q4G0X9 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC40Q4G0X9 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC40Q4G0X9 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC40Q4G0X9 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC40Q4G0X9 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 56.6 ms