Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC18.71■□□□□ 0.59
USP41Q3LFD5 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
USP41Q3LFD5 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
USP41Q3LFD5 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC18.71■□□□□ 0.59
USP41Q3LFD5 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC18.71■□□□□ 0.59
USP41Q3LFD5 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.71■□□□□ 0.59
USP41Q3LFD5 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC18.71■□□□□ 0.59
USP41Q3LFD5 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
USP41Q3LFD5 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
USP41Q3LFD5 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
USP41Q3LFD5 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
USP41Q3LFD5 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC18.71■□□□□ 0.59
USP41Q3LFD5 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
USP41Q3LFD5 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC18.71■□□□□ 0.59
USP41Q3LFD5 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
USP41Q3LFD5 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC18.71■□□□□ 0.59
USP41Q3LFD5 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
USP41Q3LFD5 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
USP41Q3LFD5 PMP22-202ENST00000395936 816 ntTSL 3 BASIC18.71■□□□□ 0.59
USP41Q3LFD5 METTL26-205ENST00000397666 726 ntTSL 2 BASIC18.71■□□□□ 0.59
USP41Q3LFD5 RPSAP43-201ENST00000402237 625 ntBASIC18.71■□□□□ 0.59
USP41Q3LFD5 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
USP41Q3LFD5 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
USP41Q3LFD5 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC18.71■□□□□ 0.59
USP41Q3LFD5 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC18.71■□□□□ 0.59
USP41Q3LFD5 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
USP41Q3LFD5 S100A2-206ENST00000497140 697 ntTSL 2 BASIC18.71■□□□□ 0.59
USP41Q3LFD5 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC18.71■□□□□ 0.59
USP41Q3LFD5 MIR3687-2-201ENST00000577708 61 ntBASIC18.71■□□□□ 0.59
USP41Q3LFD5 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC18.71■□□□□ 0.59
USP41Q3LFD5 AC010327.4-202ENST00000591484 748 ntBASIC18.71■□□□□ 0.59
USP41Q3LFD5 MIR3687-1-201ENST00000614492 61 ntBASIC18.71■□□□□ 0.59
USP41Q3LFD5 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC18.71■□□□□ 0.59
USP41Q3LFD5 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
USP41Q3LFD5 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
USP41Q3LFD5 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
USP41Q3LFD5 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
USP41Q3LFD5 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
USP41Q3LFD5 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
USP41Q3LFD5 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
USP41Q3LFD5 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
USP41Q3LFD5 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18.7■□□□□ 0.58
USP41Q3LFD5 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
USP41Q3LFD5 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
USP41Q3LFD5 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
USP41Q3LFD5 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
USP41Q3LFD5 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
USP41Q3LFD5 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.7■□□□□ 0.58
USP41Q3LFD5 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
USP41Q3LFD5 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
USP41Q3LFD5 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC18.7■□□□□ 0.58
USP41Q3LFD5 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC18.7■□□□□ 0.58
USP41Q3LFD5 AC004832.2-201ENST00000426397 482 ntBASIC18.7■□□□□ 0.58
USP41Q3LFD5 GPX1P2-201ENST00000429271 606 ntBASIC18.7■□□□□ 0.58
USP41Q3LFD5 AC092183.1-201ENST00000469884 875 ntBASIC18.7■□□□□ 0.58
USP41Q3LFD5 IGHV3-52-201ENST00000519770 353 ntBASIC18.7■□□□□ 0.58
USP41Q3LFD5 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
USP41Q3LFD5 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC18.7■□□□□ 0.58
USP41Q3LFD5 AC002347.1-201ENST00000569543 541 ntBASIC18.7■□□□□ 0.58
USP41Q3LFD5 TCAP-202ENST00000578283 583 ntTSL 5 BASIC18.7■□□□□ 0.58
USP41Q3LFD5 AC006504.4-201ENST00000592118 1568 ntBASIC18.7■□□□□ 0.58
USP41Q3LFD5 AC064836.3-201ENST00000607928 673 ntBASIC18.7■□□□□ 0.58
USP41Q3LFD5 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
USP41Q3LFD5 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.7■□□□□ 0.58
USP41Q3LFD5 AL691403.2-201ENST00000618460 490 ntBASIC18.7■□□□□ 0.58
USP41Q3LFD5 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC18.7■□□□□ 0.58
USP41Q3LFD5 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
USP41Q3LFD5 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
USP41Q3LFD5 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
USP41Q3LFD5 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.7■□□□□ 0.58
USP41Q3LFD5 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC18.7■□□□□ 0.58
USP41Q3LFD5 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
USP41Q3LFD5 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
USP41Q3LFD5 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
USP41Q3LFD5 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
USP41Q3LFD5 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC18.69■□□□□ 0.58
USP41Q3LFD5 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.69■□□□□ 0.58
USP41Q3LFD5 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP41Q3LFD5 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP41Q3LFD5 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC18.69■□□□□ 0.58
USP41Q3LFD5 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP41Q3LFD5 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP41Q3LFD5 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC18.69■□□□□ 0.58
USP41Q3LFD5 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP41Q3LFD5 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.69■□□□□ 0.58
USP41Q3LFD5 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC18.69■□□□□ 0.58
USP41Q3LFD5 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP41Q3LFD5 ELK2BP-201ENST00000415014 1224 ntBASIC18.69■□□□□ 0.58
USP41Q3LFD5 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC18.69■□□□□ 0.58
USP41Q3LFD5 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC18.69■□□□□ 0.58
USP41Q3LFD5 STK19B-204ENST00000512515 211 ntBASIC18.69■□□□□ 0.58
USP41Q3LFD5 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC18.69■□□□□ 0.58
USP41Q3LFD5 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC18.69■□□□□ 0.58
USP41Q3LFD5 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC18.69■□□□□ 0.58
USP41Q3LFD5 STK25P1-201ENST00000585406 838 ntBASIC18.69■□□□□ 0.58
USP41Q3LFD5 HOTTIP_1.1-201ENST00000620415 57 ntBASIC18.69■□□□□ 0.58
USP41Q3LFD5 AC055717.3-201ENST00000622967 595 ntBASIC18.69■□□□□ 0.58
USP41Q3LFD5 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP41Q3LFD5 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USP41Q3LFD5 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms