Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.95■□□□□ 0.3
COL28A1Q2UY09 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 GK-202ENST00000378941 458 ntTSL 3 BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 KIRREL3-AS3-201ENST00000404882 831 ntBASIC16.94■□□□□ 0.3
COL28A1Q2UY09 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 ABCD1P5-201ENST00000445663 754 ntBASIC16.94■□□□□ 0.3
COL28A1Q2UY09 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 AC190387.1-201ENST00000551683 408 ntBASIC16.94■□□□□ 0.3
COL28A1Q2UY09 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 AC107918.4-202ENST00000641623 219 ntBASIC16.94■□□□□ 0.3
COL28A1Q2UY09 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
COL28A1Q2UY09 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL28A1Q2UY09 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL28A1Q2UY09 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL28A1Q2UY09 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
COL28A1Q2UY09 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL28A1Q2UY09 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
COL28A1Q2UY09 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
COL28A1Q2UY09 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL28A1Q2UY09 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
COL28A1Q2UY09 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL28A1Q2UY09 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
COL28A1Q2UY09 CD82-202ENST00000342935 967 ntTSL 5 BASIC16.93■□□□□ 0.3
COL28A1Q2UY09 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC16.93■□□□□ 0.3
COL28A1Q2UY09 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC16.93■□□□□ 0.3
COL28A1Q2UY09 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC16.93■□□□□ 0.3
COL28A1Q2UY09 KRT18P41-201ENST00000518924 1277 ntBASIC16.93■□□□□ 0.3
COL28A1Q2UY09 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC16.93■□□□□ 0.3
COL28A1Q2UY09 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC16.93■□□□□ 0.3
COL28A1Q2UY09 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC16.93■□□□□ 0.3
COL28A1Q2UY09 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
COL28A1Q2UY09 NAT14-202ENST00000587400 416 ntTSL 5 BASIC16.93■□□□□ 0.3
COL28A1Q2UY09 MTDHP4-201ENST00000600287 670 ntBASIC16.93■□□□□ 0.3
COL28A1Q2UY09 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
COL28A1Q2UY09 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL28A1Q2UY09 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
COL28A1Q2UY09 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC16.93■□□□□ 0.3
COL28A1Q2UY09 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL28A1Q2UY09 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL28A1Q2UY09 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
COL28A1Q2UY09 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC16.93■□□□□ 0.3
COL28A1Q2UY09 AC063926.2-201ENST00000623766 1308 ntBASIC16.93■□□□□ 0.3
COL28A1Q2UY09 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
COL28A1Q2UY09 WIZP1-201ENST00000531444 2299 ntBASIC16.93■□□□□ 0.3
COL28A1Q2UY09 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
COL28A1Q2UY09 USP49-202ENST00000373010 2446 ntTSL 5 BASIC16.92■□□□□ 0.3
COL28A1Q2UY09 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL28A1Q2UY09 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC16.92■□□□□ 0.3
COL28A1Q2UY09 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
COL28A1Q2UY09 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL28A1Q2UY09 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL28A1Q2UY09 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL28A1Q2UY09 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
COL28A1Q2UY09 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL28A1Q2UY09 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL28A1Q2UY09 KRT18P2-201ENST00000447938 1258 ntBASIC16.92■□□□□ 0.3
COL28A1Q2UY09 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC16.92■□□□□ 0.3
COL28A1Q2UY09 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC16.92■□□□□ 0.3
COL28A1Q2UY09 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC16.92■□□□□ 0.3
COL28A1Q2UY09 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC16.92■□□□□ 0.3
COL28A1Q2UY09 MIR4745-201ENST00000577608 62 ntBASIC16.92■□□□□ 0.3
COL28A1Q2UY09 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC16.92■□□□□ 0.3
COL28A1Q2UY09 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC16.92■□□□□ 0.3
COL28A1Q2UY09 AL139288.1-201ENST00000623748 933 ntBASIC16.92■□□□□ 0.3
COL28A1Q2UY09 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC16.92■□□□□ 0.3
COL28A1Q2UY09 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
COL28A1Q2UY09 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms