Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC18.22■□□□□ 0.51
HMGA1P17096 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HMGA1P17096 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
HMGA1P17096 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
HMGA1P17096 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
HMGA1P17096 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HMGA1P17096 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.22■□□□□ 0.51
HMGA1P17096 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
HMGA1P17096 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC18.22■□□□□ 0.51
HMGA1P17096 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
HMGA1P17096 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
HMGA1P17096 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HMGA1P17096 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HMGA1P17096 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.21■□□□□ 0.51
HMGA1P17096 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HMGA1P17096 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HMGA1P17096 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HMGA1P17096 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC18.21■□□□□ 0.51
HMGA1P17096 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.21■□□□□ 0.51
HMGA1P17096 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HMGA1P17096 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HMGA1P17096 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HMGA1P17096 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC18.21■□□□□ 0.51
HMGA1P17096 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC18.21■□□□□ 0.51
HMGA1P17096 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HMGA1P17096 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
HMGA1P17096 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
HMGA1P17096 YBX2P1-201ENST00000394192 760 ntBASIC18.21■□□□□ 0.51
HMGA1P17096 MIR1233-2-201ENST00000408138 82 ntBASIC18.21■□□□□ 0.51
HMGA1P17096 MIR1233-1-201ENST00000408722 82 ntBASIC18.21■□□□□ 0.51
HMGA1P17096 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.21■□□□□ 0.51
HMGA1P17096 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
HMGA1P17096 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HMGA1P17096 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC18.21■□□□□ 0.51
HMGA1P17096 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC18.21■□□□□ 0.51
HMGA1P17096 AC004790.2-201ENST00000623588 572 ntBASIC18.21■□□□□ 0.51
HMGA1P17096 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC18.21■□□□□ 0.51
HMGA1P17096 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.21■□□□□ 0.51
HMGA1P17096 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.21■□□□□ 0.51
HMGA1P17096 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HMGA1P17096 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HMGA1P17096 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.21■□□□□ 0.51
HMGA1P17096 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC18.21■□□□□ 0.51
HMGA1P17096 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC18.21■□□□□ 0.51
HMGA1P17096 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
HMGA1P17096 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGA1P17096 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGA1P17096 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGA1P17096 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC18.2■□□□□ 0.5
HMGA1P17096 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HMGA1P17096 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.2■□□□□ 0.5
HMGA1P17096 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.2■□□□□ 0.5
HMGA1P17096 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.2■□□□□ 0.5
HMGA1P17096 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGA1P17096 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGA1P17096 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC18.2■□□□□ 0.5
HMGA1P17096 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGA1P17096 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGA1P17096 ENSA-206ENST00000361631 725 ntTSL 2 BASIC18.2■□□□□ 0.5
HMGA1P17096 PMP22-202ENST00000395936 816 ntTSL 3 BASIC18.2■□□□□ 0.5
HMGA1P17096 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
HMGA1P17096 AC023274.1-201ENST00000418278 595 ntBASIC18.2■□□□□ 0.5
HMGA1P17096 AC004832.2-201ENST00000426397 482 ntBASIC18.2■□□□□ 0.5
HMGA1P17096 VN2R19P-201ENST00000442399 1052 ntBASIC18.2■□□□□ 0.5
HMGA1P17096 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC18.2■□□□□ 0.5
HMGA1P17096 RIN3-211ENST00000557762 517 ntTSL 3 BASIC18.2■□□□□ 0.5
HMGA1P17096 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.2■□□□□ 0.5
HMGA1P17096 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC18.2■□□□□ 0.5
HMGA1P17096 AC006116.8-202ENST00000587620 1550 ntBASIC18.2■□□□□ 0.5
HMGA1P17096 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGA1P17096 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC18.2■□□□□ 0.5
HMGA1P17096 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC18.2■□□□□ 0.5
HMGA1P17096 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC18.2■□□□□ 0.5
HMGA1P17096 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGA1P17096 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGA1P17096 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGA1P17096 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.2■□□□□ 0.5
HMGA1P17096 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGA1P17096 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
HMGA1P17096 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.19■□□□□ 0.5
HMGA1P17096 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC18.19■□□□□ 0.5
HMGA1P17096 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGA1P17096 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC18.19■□□□□ 0.5
HMGA1P17096 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC18.19■□□□□ 0.5
HMGA1P17096 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGA1P17096 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGA1P17096 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HMGA1P17096 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGA1P17096 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGA1P17096 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
HMGA1P17096 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGA1P17096 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGA1P17096 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGA1P17096 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HMGA1P17096 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HMGA1P17096 METTL26-205ENST00000397666 726 ntTSL 2 BASIC18.19■□□□□ 0.5
HMGA1P17096 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGA1P17096 RPSAP43-201ENST00000402237 625 ntBASIC18.19■□□□□ 0.5
HMGA1P17096 CRYGEP-201ENST00000412192 528 ntBASIC18.19■□□□□ 0.5
HMGA1P17096 UPF3AP3-201ENST00000420996 769 ntBASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms