Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PRKNO60260 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PRKNO60260 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.43■□□□□ 0.22
PRKNO60260 NOC2LP2-201ENST00000407594 1944 ntBASIC16.43■□□□□ 0.22
PRKNO60260 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PRKNO60260 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PRKNO60260 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PRKNO60260 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PRKNO60260 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.43■□□□□ 0.22
PRKNO60260 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.43■□□□□ 0.22
PRKNO60260 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
PRKNO60260 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC16.43■□□□□ 0.22
PRKNO60260 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.43■□□□□ 0.22
PRKNO60260 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PRKNO60260 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
PRKNO60260 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.43■□□□□ 0.22
PRKNO60260 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC16.43■□□□□ 0.22
PRKNO60260 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.43■□□□□ 0.22
PRKNO60260 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PRKNO60260 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
PRKNO60260 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.43■□□□□ 0.22
PRKNO60260 AP001269.4-201ENST00000609611 512 ntBASIC16.43■□□□□ 0.22
PRKNO60260 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PRKNO60260 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC16.43■□□□□ 0.22
PRKNO60260 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
PRKNO60260 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.43■□□□□ 0.22
PRKNO60260 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.43■□□□□ 0.22
PRKNO60260 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC16.43■□□□□ 0.22
PRKNO60260 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.43■□□□□ 0.22
PRKNO60260 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PRKNO60260 AC006116.8-202ENST00000587620 1550 ntBASIC16.43■□□□□ 0.22
PRKNO60260 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PRKNO60260 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PRKNO60260 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC16.42■□□□□ 0.22
PRKNO60260 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.42■□□□□ 0.22
PRKNO60260 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PRKNO60260 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
PRKNO60260 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PRKNO60260 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
PRKNO60260 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC16.42■□□□□ 0.22
PRKNO60260 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
PRKNO60260 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC16.42■□□□□ 0.22
PRKNO60260 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PRKNO60260 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
PRKNO60260 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC16.42■□□□□ 0.22
PRKNO60260 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC16.42■□□□□ 0.22
PRKNO60260 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PRKNO60260 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PRKNO60260 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
PRKNO60260 FAM220CP-201ENST00000395253 831 ntBASIC16.42■□□□□ 0.22
PRKNO60260 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PRKNO60260 SAPCD2P3-201ENST00000455031 850 ntBASIC16.42■□□□□ 0.22
PRKNO60260 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC16.42■□□□□ 0.22
PRKNO60260 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC16.42■□□□□ 0.22
PRKNO60260 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PRKNO60260 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PRKNO60260 AC104692.2-201ENST00000603054 253 ntBASIC16.42■□□□□ 0.22
PRKNO60260 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PRKNO60260 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PRKNO60260 AL355312.1-201ENST00000407115 2176 ntBASIC16.42■□□□□ 0.22
PRKNO60260 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PRKNO60260 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.42■□□□□ 0.22
PRKNO60260 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PRKNO60260 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PRKNO60260 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC16.42■□□□□ 0.22
PRKNO60260 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PRKNO60260 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PRKNO60260 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PRKNO60260 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
PRKNO60260 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PRKNO60260 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
PRKNO60260 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
PRKNO60260 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC16.42■□□□□ 0.22
PRKNO60260 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PRKNO60260 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PRKNO60260 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PRKNO60260 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PRKNO60260 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.41■□□□□ 0.22
PRKNO60260 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PRKNO60260 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PRKNO60260 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PRKNO60260 REXO1L11P-201ENST00000620964 1927 ntBASIC16.41■□□□□ 0.22
PRKNO60260 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.41■□□□□ 0.22
PRKNO60260 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
PRKNO60260 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
PRKNO60260 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
PRKNO60260 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PRKNO60260 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PRKNO60260 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC16.41■□□□□ 0.22
PRKNO60260 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.41■□□□□ 0.22
PRKNO60260 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.41■□□□□ 0.22
PRKNO60260 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.41■□□□□ 0.22
PRKNO60260 TMED1-207ENST00000591695 809 ntTSL 5 BASIC16.41■□□□□ 0.22
PRKNO60260 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.41■□□□□ 0.22
PRKNO60260 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PRKNO60260 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC16.41■□□□□ 0.22
PRKNO60260 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PRKNO60260 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.41■□□□□ 0.22
PRKNO60260 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC16.41■□□□□ 0.22
PRKNO60260 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms