Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
HOXC11O43248 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC17.91■□□□□ 0.46
HOXC11O43248 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
HOXC11O43248 METTL26-205ENST00000397666 726 ntTSL 2 BASIC17.91■□□□□ 0.46
HOXC11O43248 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
HOXC11O43248 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC17.91■□□□□ 0.46
HOXC11O43248 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.91■□□□□ 0.46
HOXC11O43248 AC008667.4-201ENST00000607370 168 ntBASIC17.91■□□□□ 0.46
HOXC11O43248 AC064836.3-201ENST00000607928 673 ntBASIC17.91■□□□□ 0.46
HOXC11O43248 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HOXC11O43248 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.91■□□□□ 0.46
HOXC11O43248 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
HOXC11O43248 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HOXC11O43248 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
HOXC11O43248 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.91■□□□□ 0.46
HOXC11O43248 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HOXC11O43248 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HOXC11O43248 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HOXC11O43248 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HOXC11O43248 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HOXC11O43248 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HOXC11O43248 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HOXC11O43248 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HOXC11O43248 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HOXC11O43248 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
HOXC11O43248 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
HOXC11O43248 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
HOXC11O43248 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC17.9■□□□□ 0.46
HOXC11O43248 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HOXC11O43248 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.9■□□□□ 0.46
HOXC11O43248 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
HOXC11O43248 YBX2P1-201ENST00000394192 760 ntBASIC17.9■□□□□ 0.46
HOXC11O43248 AC004832.2-201ENST00000426397 482 ntBASIC17.9■□□□□ 0.46
HOXC11O43248 RPS15P9-201ENST00000494093 319 ntBASIC17.9■□□□□ 0.46
HOXC11O43248 IGHV3-65-201ENST00000523210 341 ntBASIC17.9■□□□□ 0.46
HOXC11O43248 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.9■□□□□ 0.46
HOXC11O43248 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.9■□□□□ 0.46
HOXC11O43248 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC17.9■□□□□ 0.46
HOXC11O43248 AL805961.1-202ENST00000641562 540 ntBASIC17.9■□□□□ 0.46
HOXC11O43248 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HOXC11O43248 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.9■□□□□ 0.46
HOXC11O43248 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC17.9■□□□□ 0.46
HOXC11O43248 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HOXC11O43248 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
HOXC11O43248 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.89■□□□□ 0.46
HOXC11O43248 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
HOXC11O43248 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HOXC11O43248 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.89■□□□□ 0.45
HOXC11O43248 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC17.89■□□□□ 0.45
HOXC11O43248 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
HOXC11O43248 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.89■□□□□ 0.45
HOXC11O43248 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
HOXC11O43248 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.89■□□□□ 0.45
HOXC11O43248 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HOXC11O43248 UPF3AP3-201ENST00000420996 769 ntBASIC17.89■□□□□ 0.45
HOXC11O43248 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
HOXC11O43248 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HOXC11O43248 AC108073.2-201ENST00000464002 357 ntBASIC17.89■□□□□ 0.45
HOXC11O43248 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC17.89■□□□□ 0.45
HOXC11O43248 AC002347.1-201ENST00000569543 541 ntBASIC17.89■□□□□ 0.45
HOXC11O43248 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HOXC11O43248 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HOXC11O43248 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.89■□□□□ 0.45
HOXC11O43248 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.89■□□□□ 0.45
HOXC11O43248 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.89■□□□□ 0.45
HOXC11O43248 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.89■□□□□ 0.45
HOXC11O43248 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC17.89■□□□□ 0.45
HOXC11O43248 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
HOXC11O43248 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HOXC11O43248 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.89■□□□□ 0.45
HOXC11O43248 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
HOXC11O43248 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
HOXC11O43248 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC17.89■□□□□ 0.45
HOXC11O43248 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.89■□□□□ 0.45
HOXC11O43248 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC17.89■□□□□ 0.45
HOXC11O43248 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC17.89■□□□□ 0.45
HOXC11O43248 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
HOXC11O43248 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HOXC11O43248 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HOXC11O43248 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HOXC11O43248 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HOXC11O43248 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
HOXC11O43248 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HOXC11O43248 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.88■□□□□ 0.45
HOXC11O43248 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HOXC11O43248 PMP22-202ENST00000395936 816 ntTSL 3 BASIC17.88■□□□□ 0.45
HOXC11O43248 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC17.88■□□□□ 0.45
HOXC11O43248 HNRNPA1P28-201ENST00000424481 961 ntBASIC17.88■□□□□ 0.45
HOXC11O43248 GPX1P2-201ENST00000429271 606 ntBASIC17.88■□□□□ 0.45
HOXC11O43248 DNAJB3-201ENST00000446806 729 ntBASIC17.88■□□□□ 0.45
HOXC11O43248 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC17.88■□□□□ 0.45
HOXC11O43248 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HOXC11O43248 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.88■□□□□ 0.45
HOXC11O43248 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC17.88■□□□□ 0.45
HOXC11O43248 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC17.88■□□□□ 0.45
HOXC11O43248 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC17.88■□□□□ 0.45
HOXC11O43248 AL353135.1-201ENST00000606729 504 ntBASIC17.88■□□□□ 0.45
HOXC11O43248 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
HOXC11O43248 AC007613.1-201ENST00000572811 2597 ntBASIC17.88■□□□□ 0.45
HOXC11O43248 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms