Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC14.23□□□□□ -0.13
HMGB3O15347 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC14.23□□□□□ -0.13
HMGB3O15347 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC14.23□□□□□ -0.13
HMGB3O15347 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC14.23□□□□□ -0.13
HMGB3O15347 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HMGB3O15347 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HMGB3O15347 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HMGB3O15347 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
HMGB3O15347 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HMGB3O15347 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HMGB3O15347 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
HMGB3O15347 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
HMGB3O15347 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC14.23□□□□□ -0.13
HMGB3O15347 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HMGB3O15347 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HMGB3O15347 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HMGB3O15347 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC14.23□□□□□ -0.13
HMGB3O15347 AC097658.1-201ENST00000475555 843 ntBASIC14.23□□□□□ -0.13
HMGB3O15347 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC14.23□□□□□ -0.13
HMGB3O15347 PRSS44-201ENST00000515154 1146 ntBASIC14.23□□□□□ -0.13
HMGB3O15347 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC14.23□□□□□ -0.13
HMGB3O15347 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC14.23□□□□□ -0.13
HMGB3O15347 OAS3-207ENST00000551007 998 ntTSL 2 BASIC14.23□□□□□ -0.13
HMGB3O15347 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
HMGB3O15347 AC004264.1-201ENST00000608354 794 ntBASIC14.23□□□□□ -0.13
HMGB3O15347 AC080038.1-201ENST00000611274 1154 ntBASIC14.23□□□□□ -0.13
HMGB3O15347 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HMGB3O15347 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC14.23□□□□□ -0.13
HMGB3O15347 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HMGB3O15347 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HMGB3O15347 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
HMGB3O15347 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HMGB3O15347 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC14.23□□□□□ -0.13
HMGB3O15347 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HMGB3O15347 ITPR3-202ENST00000605930 9029 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HMGB3O15347 PRDM10-202ENST00000358825 6322 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HMGB3O15347 PRDM10-203ENST00000360871 6301 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HMGB3O15347 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC14.23□□□□□ -0.13
HMGB3O15347 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC14.23□□□□□ -0.13
HMGB3O15347 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
HMGB3O15347 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
HMGB3O15347 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HMGB3O15347 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
HMGB3O15347 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC14.22□□□□□ -0.13
HMGB3O15347 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HMGB3O15347 EPM2AIP1-201ENST00000322716 8126 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
HMGB3O15347 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
HMGB3O15347 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HMGB3O15347 CHL1-201ENST00000256509 8023 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HMGB3O15347 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
HMGB3O15347 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HMGB3O15347 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
HMGB3O15347 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC14.22□□□□□ -0.13
HMGB3O15347 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
HMGB3O15347 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HMGB3O15347 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC14.22□□□□□ -0.13
HMGB3O15347 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
HMGB3O15347 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HMGB3O15347 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC14.22□□□□□ -0.13
HMGB3O15347 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HMGB3O15347 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC14.22□□□□□ -0.13
HMGB3O15347 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
HMGB3O15347 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
HMGB3O15347 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC14.22□□□□□ -0.13
HMGB3O15347 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HMGB3O15347 KRT18P41-201ENST00000518924 1277 ntBASIC14.22□□□□□ -0.13
HMGB3O15347 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC14.22□□□□□ -0.13
HMGB3O15347 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HMGB3O15347 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC14.22□□□□□ -0.13
HMGB3O15347 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HMGB3O15347 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC14.22□□□□□ -0.13
HMGB3O15347 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
HMGB3O15347 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HMGB3O15347 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HMGB3O15347 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
HMGB3O15347 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC14.22□□□□□ -0.13
HMGB3O15347 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HMGB3O15347 FUK-207ENST00000571514 3054 ntTSL 2 BASIC14.22□□□□□ -0.13
HMGB3O15347 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HMGB3O15347 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
HMGB3O15347 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
HMGB3O15347 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
HMGB3O15347 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HMGB3O15347 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC14.22□□□□□ -0.13
HMGB3O15347 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC14.22□□□□□ -0.13
HMGB3O15347 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HMGB3O15347 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
HMGB3O15347 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HMGB3O15347 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HMGB3O15347 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC14.22□□□□□ -0.13
HMGB3O15347 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HMGB3O15347 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
HMGB3O15347 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC14.21□□□□□ -0.13
HMGB3O15347 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HMGB3O15347 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HMGB3O15347 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HMGB3O15347 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
HMGB3O15347 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC14.21□□□□□ -0.13
HMGB3O15347 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC14.21□□□□□ -0.13
HMGB3O15347 GRM1-204ENST00000492807 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms