Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 AP003071.4-201ENST00000562276 1284 ntBASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 AC112497.1-201ENST00000624824 639 ntBASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CHMP1AQ9HD42 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 AP001094.4-201ENST00000579008 2176 ntBASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 KIRREL3-AS3-201ENST00000404882 831 ntBASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 GCSHP5-201ENST00000443090 522 ntBASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 AC098590.1-201ENST00000468126 897 ntBASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 DENND3-207ENST00000518347 850 ntTSL 2 BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 BX088651.1-201ENST00000540551 451 ntBASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 AL353719.1-201ENST00000566847 864 ntBASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 ACE-204ENST00000428043 5120 ntTSL 2 BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC15.25■□□□□ 0.03
CHMP1AQ9HD42 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 MME-217ENST00000616757 1315 ntTSL 5 BASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 KRT18P55-202ENST00000578578 1546 ntBASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 MDFI-202ENST00000373050 809 ntTSL 2 BASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 GRAMD4P1-201ENST00000435181 1110 ntBASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 AC116562.4-202ENST00000641738 218 ntBASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
CHMP1AQ9HD42 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms