Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CCDC28BQ9BUN5 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC28BQ9BUN5 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.21■□□□□ 0.35
CCDC28BQ9BUN5 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.21■□□□□ 0.35
CCDC28BQ9BUN5 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC28BQ9BUN5 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC28BQ9BUN5 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC28BQ9BUN5 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CCDC28BQ9BUN5 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.21■□□□□ 0.35
CCDC28BQ9BUN5 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
CCDC28BQ9BUN5 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC28BQ9BUN5 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
CCDC28BQ9BUN5 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC28BQ9BUN5 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CCDC28BQ9BUN5 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
CCDC28BQ9BUN5 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC28BQ9BUN5 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC28BQ9BUN5 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC17.21■□□□□ 0.35
CCDC28BQ9BUN5 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC28BQ9BUN5 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC28BQ9BUN5 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC28BQ9BUN5 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC17.21■□□□□ 0.35
CCDC28BQ9BUN5 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC17.21■□□□□ 0.35
CCDC28BQ9BUN5 AC113410.3-201ENST00000623366 203 ntBASIC17.21■□□□□ 0.35
CCDC28BQ9BUN5 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC28BQ9BUN5 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC28BQ9BUN5 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC28BQ9BUN5 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CCDC28BQ9BUN5 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC28BQ9BUN5 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC28BQ9BUN5 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CCDC28BQ9BUN5 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CCDC28BQ9BUN5 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CCDC28BQ9BUN5 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.34
CCDC28BQ9BUN5 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.34
CCDC28BQ9BUN5 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 RPS2P55-201ENST00000397318 883 ntBASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 AC107956.1-201ENST00000494359 873 ntBASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 AC113404.2-201ENST00000507884 177 ntBASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
CCDC28BQ9BUN5 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 AC007663.1-201ENST00000438948 1240 ntBASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.19■□□□□ 0.34
CCDC28BQ9BUN5 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms