Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
COL12A1Q99715 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC15.3■□□□□ 0.04
COL12A1Q99715 KLF4P1-201ENST00000412782 1185 ntBASIC15.3■□□□□ 0.04
COL12A1Q99715 AL020989.1-201ENST00000422979 469 ntBASIC15.3■□□□□ 0.04
COL12A1Q99715 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL12A1Q99715 FAM185BP-201ENST00000443595 716 ntBASIC15.3■□□□□ 0.04
COL12A1Q99715 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
COL12A1Q99715 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC15.3■□□□□ 0.04
COL12A1Q99715 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL12A1Q99715 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL12A1Q99715 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC15.3■□□□□ 0.04
COL12A1Q99715 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
COL12A1Q99715 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL12A1Q99715 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL12A1Q99715 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL12A1Q99715 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
COL12A1Q99715 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL12A1Q99715 RPF1-202ENST00000370656 724 ntTSL 2 BASIC15.29■□□□□ 0.04
COL12A1Q99715 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL12A1Q99715 FUT8-AS1-201ENST00000621019 1521 ntBASIC15.29■□□□□ 0.04
COL12A1Q99715 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL12A1Q99715 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL12A1Q99715 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL12A1Q99715 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL12A1Q99715 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL12A1Q99715 DDX43P3-201ENST00000441064 443 ntBASIC15.29■□□□□ 0.04
COL12A1Q99715 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
COL12A1Q99715 AC122714.2-201ENST00000502787 707 ntBASIC15.29■□□□□ 0.04
COL12A1Q99715 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC15.29■□□□□ 0.04
COL12A1Q99715 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC15.29■□□□□ 0.04
COL12A1Q99715 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC15.29■□□□□ 0.04
COL12A1Q99715 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL12A1Q99715 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC15.29■□□□□ 0.04
COL12A1Q99715 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC15.29■□□□□ 0.04
COL12A1Q99715 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL12A1Q99715 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL12A1Q99715 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC15.28■□□□□ 0.04
COL12A1Q99715 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL12A1Q99715 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC15.28■□□□□ 0.04
COL12A1Q99715 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL12A1Q99715 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC15.28■□□□□ 0.04
COL12A1Q99715 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC15.28■□□□□ 0.04
COL12A1Q99715 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL12A1Q99715 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC15.28■□□□□ 0.04
COL12A1Q99715 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
COL12A1Q99715 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL12A1Q99715 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL12A1Q99715 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC15.28■□□□□ 0.04
COL12A1Q99715 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL12A1Q99715 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
COL12A1Q99715 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL12A1Q99715 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL12A1Q99715 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL12A1Q99715 AL355306.1-201ENST00000415580 579 ntBASIC15.28■□□□□ 0.04
COL12A1Q99715 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL12A1Q99715 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC15.28■□□□□ 0.04
COL12A1Q99715 AC106886.1-201ENST00000568660 600 ntBASIC15.28■□□□□ 0.04
COL12A1Q99715 SSH2-211ENST00000590153 570 ntTSL 4 BASIC15.28■□□□□ 0.04
COL12A1Q99715 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC15.28■□□□□ 0.04
COL12A1Q99715 GID4-202ENST00000376345 1391 ntTSL 3 BASIC15.28■□□□□ 0.04
COL12A1Q99715 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL12A1Q99715 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC15.28■□□□□ 0.04
COL12A1Q99715 SP100-208ENST00000427101 1922 ntTSL 2 BASIC15.28■□□□□ 0.04
COL12A1Q99715 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL12A1Q99715 REXO1L6P-201ENST00000603433 1515 ntBASIC15.28■□□□□ 0.04
COL12A1Q99715 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC15.28■□□□□ 0.04
COL12A1Q99715 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC15.28■□□□□ 0.04
COL12A1Q99715 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
COL12A1Q99715 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC15.28■□□□□ 0.04
COL12A1Q99715 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL12A1Q99715 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL12A1Q99715 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
COL12A1Q99715 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC15.28■□□□□ 0.04
COL12A1Q99715 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC15.28■□□□□ 0.04
COL12A1Q99715 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC15.28■□□□□ 0.04
COL12A1Q99715 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
COL12A1Q99715 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC15.28■□□□□ 0.04
COL12A1Q99715 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL12A1Q99715 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL12A1Q99715 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC15.27■□□□□ 0.04
COL12A1Q99715 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL12A1Q99715 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL12A1Q99715 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
COL12A1Q99715 MYLKP1-201ENST00000509077 1580 ntBASIC15.27■□□□□ 0.04
COL12A1Q99715 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
COL12A1Q99715 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC15.27■□□□□ 0.04
COL12A1Q99715 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL12A1Q99715 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL12A1Q99715 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
COL12A1Q99715 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
COL12A1Q99715 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC15.27■□□□□ 0.04
COL12A1Q99715 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC15.27■□□□□ 0.04
COL12A1Q99715 AC069120.2-201ENST00000524091 540 ntBASIC15.27■□□□□ 0.04
COL12A1Q99715 CDK4-206ENST00000549606 558 ntTSL 2 BASIC15.27■□□□□ 0.04
COL12A1Q99715 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
COL12A1Q99715 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
COL12A1Q99715 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC15.27■□□□□ 0.04
COL12A1Q99715 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
COL12A1Q99715 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC15.27■□□□□ 0.03
COL12A1Q99715 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms