Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
VPS35Q96QK1 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC17.56■□□□□ 0.4
VPS35Q96QK1 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
VPS35Q96QK1 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
VPS35Q96QK1 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VPS35Q96QK1 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
VPS35Q96QK1 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS35Q96QK1 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS35Q96QK1 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS35Q96QK1 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS35Q96QK1 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VPS35Q96QK1 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS35Q96QK1 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.56■□□□□ 0.4
VPS35Q96QK1 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
VPS35Q96QK1 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
VPS35Q96QK1 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS35Q96QK1 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS35Q96QK1 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.55■□□□□ 0.4
VPS35Q96QK1 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VPS35Q96QK1 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VPS35Q96QK1 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
VPS35Q96QK1 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.55■□□□□ 0.4
VPS35Q96QK1 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.55■□□□□ 0.4
VPS35Q96QK1 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS35Q96QK1 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS35Q96QK1 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC17.55■□□□□ 0.4
VPS35Q96QK1 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VPS35Q96QK1 THAP5-204ENST00000438865 868 ntTSL 2 BASIC17.55■□□□□ 0.4
VPS35Q96QK1 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC17.55■□□□□ 0.4
VPS35Q96QK1 AC091304.2-201ENST00000564639 760 ntBASIC17.55■□□□□ 0.4
VPS35Q96QK1 COX5A-204ENST00000567270 579 ntTSL 3 BASIC17.55■□□□□ 0.4
VPS35Q96QK1 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VPS35Q96QK1 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS35Q96QK1 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC17.55■□□□□ 0.4
VPS35Q96QK1 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS35Q96QK1 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC17.55■□□□□ 0.4
VPS35Q96QK1 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC17.55■□□□□ 0.4
VPS35Q96QK1 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC17.55■□□□□ 0.4
VPS35Q96QK1 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.55■□□□□ 0.4
VPS35Q96QK1 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.55■□□□□ 0.4
VPS35Q96QK1 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.55■□□□□ 0.4
VPS35Q96QK1 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS35Q96QK1 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VPS35Q96QK1 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VPS35Q96QK1 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.55■□□□□ 0.4
VPS35Q96QK1 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VPS35Q96QK1 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS35Q96QK1 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VPS35Q96QK1 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.54■□□□□ 0.4
VPS35Q96QK1 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
VPS35Q96QK1 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
VPS35Q96QK1 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS35Q96QK1 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS35Q96QK1 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.54■□□□□ 0.4
VPS35Q96QK1 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS35Q96QK1 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS35Q96QK1 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS35Q96QK1 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS35Q96QK1 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS35Q96QK1 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VPS35Q96QK1 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS35Q96QK1 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS35Q96QK1 AC103564.2-201ENST00000432853 1299 ntBASIC17.54■□□□□ 0.4
VPS35Q96QK1 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC17.54■□□□□ 0.4
VPS35Q96QK1 GZMM-202ENST00000592501 941 ntTSL 3 BASIC17.54■□□□□ 0.4
VPS35Q96QK1 AL591684.3-201ENST00000605187 298 ntBASIC17.54■□□□□ 0.4
VPS35Q96QK1 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS35Q96QK1 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VPS35Q96QK1 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VPS35Q96QK1 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
VPS35Q96QK1 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.54■□□□□ 0.4
VPS35Q96QK1 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS35Q96QK1 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS35Q96QK1 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
VPS35Q96QK1 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
VPS35Q96QK1 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS35Q96QK1 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VPS35Q96QK1 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.53■□□□□ 0.4
VPS35Q96QK1 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VPS35Q96QK1 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VPS35Q96QK1 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS35Q96QK1 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS35Q96QK1 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS35Q96QK1 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS35Q96QK1 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VPS35Q96QK1 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS35Q96QK1 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.53■□□□□ 0.4
VPS35Q96QK1 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.53■□□□□ 0.4
VPS35Q96QK1 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
VPS35Q96QK1 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.53■□□□□ 0.4
VPS35Q96QK1 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VPS35Q96QK1 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
VPS35Q96QK1 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
VPS35Q96QK1 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.53■□□□□ 0.4
VPS35Q96QK1 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC17.53■□□□□ 0.4
VPS35Q96QK1 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
VPS35Q96QK1 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC17.53■□□□□ 0.4
VPS35Q96QK1 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC17.53■□□□□ 0.4
VPS35Q96QK1 TPM1-218ENST00000559281 851 ntTSL 5 BASIC17.53■□□□□ 0.4
VPS35Q96QK1 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms