Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC17.07■□□□□ 0.32
CLIP3Q96DZ5 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CLIP3Q96DZ5 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
CLIP3Q96DZ5 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.07■□□□□ 0.32
CLIP3Q96DZ5 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLIP3Q96DZ5 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC17.07■□□□□ 0.32
CLIP3Q96DZ5 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLIP3Q96DZ5 COX5A-204ENST00000567270 579 ntTSL 3 BASIC17.07■□□□□ 0.32
CLIP3Q96DZ5 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC17.07■□□□□ 0.32
CLIP3Q96DZ5 AC005336.2-201ENST00000593183 939 ntBASIC17.07■□□□□ 0.32
CLIP3Q96DZ5 IGHV3OR16-7-201ENST00000604106 360 ntBASIC17.07■□□□□ 0.32
CLIP3Q96DZ5 AC114341.1-201ENST00000618070 349 ntBASIC17.07■□□□□ 0.32
CLIP3Q96DZ5 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC17.07■□□□□ 0.32
CLIP3Q96DZ5 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.07■□□□□ 0.32
CLIP3Q96DZ5 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLIP3Q96DZ5 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLIP3Q96DZ5 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLIP3Q96DZ5 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CLIP3Q96DZ5 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLIP3Q96DZ5 AL138781.2-201ENST00000617896 1843 ntBASIC17.07■□□□□ 0.32
CLIP3Q96DZ5 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLIP3Q96DZ5 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CLIP3Q96DZ5 AC018470.1-201ENST00000624790 3129 ntBASIC17.07■□□□□ 0.32
CLIP3Q96DZ5 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLIP3Q96DZ5 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLIP3Q96DZ5 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
CLIP3Q96DZ5 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CLIP3Q96DZ5 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 AC009078.2-202ENST00000463353 338 ntBASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 AC009533.2-201ENST00000543664 586 ntBASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 REXO1L6P-202ENST00000619970 1078 ntBASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CLIP3Q96DZ5 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 TP73-AS1-210ENST00000637775 1455 ntBASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 AC009053.2-201ENST00000563701 2365 ntBASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 AKR1C7P-201ENST00000305623 895 ntBASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 AC104692.2-201ENST00000603054 253 ntBASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CLIP3Q96DZ5 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms