Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC14.1□□□□□ -0.15
CLRN3Q8NCR9 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLRN3Q8NCR9 AC005915.1-201ENST00000624912 2018 ntBASIC14.1□□□□□ -0.15
CLRN3Q8NCR9 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC14.1□□□□□ -0.15
CLRN3Q8NCR9 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLRN3Q8NCR9 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLRN3Q8NCR9 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLRN3Q8NCR9 GMCL1P1-201ENST00000463439 1581 ntBASIC14.1□□□□□ -0.15
CLRN3Q8NCR9 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLRN3Q8NCR9 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLRN3Q8NCR9 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLRN3Q8NCR9 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
CLRN3Q8NCR9 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
CLRN3Q8NCR9 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLRN3Q8NCR9 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC14.1□□□□□ -0.15
CLRN3Q8NCR9 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLRN3Q8NCR9 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLRN3Q8NCR9 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLRN3Q8NCR9 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLRN3Q8NCR9 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLRN3Q8NCR9 AL365209.1-201ENST00000624418 6473 ntBASIC14.1□□□□□ -0.15
CLRN3Q8NCR9 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC14.1□□□□□ -0.15
CLRN3Q8NCR9 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLRN3Q8NCR9 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLRN3Q8NCR9 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC14.1□□□□□ -0.15
CLRN3Q8NCR9 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC14.1□□□□□ -0.15
CLRN3Q8NCR9 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLRN3Q8NCR9 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CLRN3Q8NCR9 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLRN3Q8NCR9 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CLRN3Q8NCR9 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 AC100803.2-201ENST00000562459 1963 ntBASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 GRK6P1-201ENST00000400595 1711 ntBASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CLRN3Q8NCR9 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
CLRN3Q8NCR9 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CLRN3Q8NCR9 AC092171.3-201ENST00000610122 2651 ntBASIC14.08□□□□□ -0.15
CLRN3Q8NCR9 AL357033.4-201ENST00000617703 1807 ntBASIC14.08□□□□□ -0.15
CLRN3Q8NCR9 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
CLRN3Q8NCR9 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC14.08□□□□□ -0.15
CLRN3Q8NCR9 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
CLRN3Q8NCR9 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CLRN3Q8NCR9 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CLRN3Q8NCR9 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CLRN3Q8NCR9 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 KATNBL1P6-202ENST00000562413 1466 ntBASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 STOX2-205ENST00000513034 807 ntTSL 3 BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 KRT18P20-201ENST00000548986 1279 ntBASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC14.08□□□□□ -0.16
CLRN3Q8NCR9 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms