Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC22.07■■□□□ 1.12
RC3H1Q5TC82 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC22.07■■□□□ 1.12
RC3H1Q5TC82 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
RC3H1Q5TC82 AC129492.6-201ENST00000611383 1305 ntBASIC22.06■■□□□ 1.12
RC3H1Q5TC82 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RC3H1Q5TC82 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RC3H1Q5TC82 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
RC3H1Q5TC82 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
RC3H1Q5TC82 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC22.06■■□□□ 1.12
RC3H1Q5TC82 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
RC3H1Q5TC82 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
RC3H1Q5TC82 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC22.06■■□□□ 1.12
RC3H1Q5TC82 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC22.06■■□□□ 1.12
RC3H1Q5TC82 NABP1-203ENST00000409510 843 ntTSL 5 BASIC22.06■■□□□ 1.12
RC3H1Q5TC82 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
RC3H1Q5TC82 RNA5SP421-201ENST00000516864 134 ntBASIC22.06■■□□□ 1.12
RC3H1Q5TC82 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC22.06■■□□□ 1.12
RC3H1Q5TC82 FAM86C2P-203ENST00000528684 1004 ntBASIC22.06■■□□□ 1.12
RC3H1Q5TC82 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC22.06■■□□□ 1.12
RC3H1Q5TC82 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC22.06■■□□□ 1.12
RC3H1Q5TC82 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC22.06■■□□□ 1.12
RC3H1Q5TC82 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
RC3H1Q5TC82 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RC3H1Q5TC82 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC22.06■■□□□ 1.12
RC3H1Q5TC82 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RC3H1Q5TC82 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC22.06■■□□□ 1.12
RC3H1Q5TC82 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC22.06■■□□□ 1.12
RC3H1Q5TC82 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
RC3H1Q5TC82 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RC3H1Q5TC82 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
RC3H1Q5TC82 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC22.06■■□□□ 1.12
RC3H1Q5TC82 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
RC3H1Q5TC82 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
RC3H1Q5TC82 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC22.05■■□□□ 1.12
RC3H1Q5TC82 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
RC3H1Q5TC82 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC22.05■■□□□ 1.12
RC3H1Q5TC82 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
RC3H1Q5TC82 FLYWCH1P1-201ENST00000460917 1874 ntBASIC22.05■■□□□ 1.12
RC3H1Q5TC82 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
RC3H1Q5TC82 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
RC3H1Q5TC82 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
RC3H1Q5TC82 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
RC3H1Q5TC82 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC22.05■■□□□ 1.12
RC3H1Q5TC82 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
RC3H1Q5TC82 AL355306.1-201ENST00000415580 579 ntBASIC22.05■■□□□ 1.12
RC3H1Q5TC82 AC244107.1-201ENST00000442033 332 ntBASIC22.05■■□□□ 1.12
RC3H1Q5TC82 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC22.05■■□□□ 1.12
RC3H1Q5TC82 TAF8-206ENST00000472818 719 ntTSL 2 BASIC22.05■■□□□ 1.12
RC3H1Q5TC82 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC22.05■■□□□ 1.12
RC3H1Q5TC82 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC22.05■■□□□ 1.12
RC3H1Q5TC82 AC099522.2-201ENST00000607001 744 ntBASIC22.05■■□□□ 1.12
RC3H1Q5TC82 Z92544.3-201ENST00000624747 417 ntBASIC22.05■■□□□ 1.12
RC3H1Q5TC82 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC22.05■■□□□ 1.12
RC3H1Q5TC82 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
RC3H1Q5TC82 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
RC3H1Q5TC82 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
RC3H1Q5TC82 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
RC3H1Q5TC82 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
RC3H1Q5TC82 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC22.04■■□□□ 1.12
RC3H1Q5TC82 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC22.04■■□□□ 1.12
RC3H1Q5TC82 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
RC3H1Q5TC82 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
RC3H1Q5TC82 CYP51A1P2-201ENST00000419457 1499 ntBASIC22.04■■□□□ 1.12
RC3H1Q5TC82 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC22.04■■□□□ 1.12
RC3H1Q5TC82 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
RC3H1Q5TC82 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
RC3H1Q5TC82 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
RC3H1Q5TC82 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC22.04■■□□□ 1.12
RC3H1Q5TC82 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
RC3H1Q5TC82 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
RC3H1Q5TC82 AL671277.1-201ENST00000429656 993 ntBASIC22.04■■□□□ 1.12
RC3H1Q5TC82 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
RC3H1Q5TC82 SLC25A6P2-201ENST00000497974 877 ntBASIC22.04■■□□□ 1.12
RC3H1Q5TC82 AL512356.2-201ENST00000546955 174 ntBASIC22.04■■□□□ 1.12
RC3H1Q5TC82 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC22.04■■□□□ 1.12
RC3H1Q5TC82 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
RC3H1Q5TC82 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
RC3H1Q5TC82 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
RC3H1Q5TC82 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
RC3H1Q5TC82 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
RC3H1Q5TC82 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
RC3H1Q5TC82 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC22.04■■□□□ 1.12
RC3H1Q5TC82 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC22.04■■□□□ 1.12
RC3H1Q5TC82 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC22.04■■□□□ 1.12
RC3H1Q5TC82 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
RC3H1Q5TC82 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
RC3H1Q5TC82 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
RC3H1Q5TC82 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
RC3H1Q5TC82 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC22.03■■□□□ 1.12
RC3H1Q5TC82 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
RC3H1Q5TC82 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
RC3H1Q5TC82 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
RC3H1Q5TC82 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
RC3H1Q5TC82 PNKD-204ENST00000436005 978 ntTSL 5 BASIC22.03■■□□□ 1.12
RC3H1Q5TC82 AC140658.5-201ENST00000438532 169 ntBASIC22.03■■□□□ 1.12
RC3H1Q5TC82 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
RC3H1Q5TC82 TIMM8BP1-201ENST00000452384 211 ntBASIC22.03■■□□□ 1.12
RC3H1Q5TC82 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC22.03■■□□□ 1.12
RC3H1Q5TC82 KRT8P48-201ENST00000515599 1220 ntBASIC22.03■■□□□ 1.12
RC3H1Q5TC82 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms