Protein–RNA interactions for Protein: P37840

SNCA, Alpha-synuclein, humanhuman

Predictions only

Length 140 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNCAP37840 KRT8P50-201ENST00000562022 1438 ntBASIC14.59□□□□□ -0.07
SNCAP37840 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC14.59□□□□□ -0.07
SNCAP37840 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC14.59□□□□□ -0.07
SNCAP37840 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
SNCAP37840 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
SNCAP37840 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC14.59□□□□□ -0.07
SNCAP37840 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
SNCAP37840 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SNCAP37840 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SNCAP37840 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
SNCAP37840 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
SNCAP37840 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
SNCAP37840 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
SNCAP37840 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC14.59□□□□□ -0.07
SNCAP37840 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SNCAP37840 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
SNCAP37840 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SNCAP37840 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
SNCAP37840 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SNCAP37840 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
SNCAP37840 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SNCAP37840 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
SNCAP37840 MESTP1-201ENST00000404287 994 ntBASIC14.59□□□□□ -0.07
SNCAP37840 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC14.59□□□□□ -0.07
SNCAP37840 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SNCAP37840 NUDT16P1-203ENST00000513809 620 ntBASIC14.59□□□□□ -0.07
SNCAP37840 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
SNCAP37840 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC14.59□□□□□ -0.07
SNCAP37840 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
SNCAP37840 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
SNCAP37840 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SNCAP37840 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SNCAP37840 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC14.59□□□□□ -0.07
SNCAP37840 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SNCAP37840 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SNCAP37840 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SNCAP37840 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SNCAP37840 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SNCAP37840 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SNCAP37840 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SNCAP37840 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SNCAP37840 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SNCAP37840 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
SNCAP37840 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
SNCAP37840 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.07
SNCAP37840 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SNCAP37840 AC009102.3-201ENST00000623118 1491 ntBASIC14.58□□□□□ -0.08
SNCAP37840 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
SNCAP37840 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SNCAP37840 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SNCAP37840 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SNCAP37840 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SNCAP37840 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC14.58□□□□□ -0.08
SNCAP37840 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SNCAP37840 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SNCAP37840 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SNCAP37840 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC14.58□□□□□ -0.08
SNCAP37840 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SNCAP37840 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC14.58□□□□□ -0.08
SNCAP37840 CRYGFP-201ENST00000418459 633 ntBASIC14.58□□□□□ -0.08
SNCAP37840 AC116562.2-201ENST00000507042 360 ntBASIC14.58□□□□□ -0.08
SNCAP37840 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC14.58□□□□□ -0.08
SNCAP37840 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC14.58□□□□□ -0.08
SNCAP37840 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC14.58□□□□□ -0.08
SNCAP37840 AC009065.1-201ENST00000564055 1225 ntBASIC14.58□□□□□ -0.08
SNCAP37840 DECR2-212ENST00000627716 352 ntTSL 2 BASIC14.58□□□□□ -0.08
SNCAP37840 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SNCAP37840 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SNCAP37840 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
SNCAP37840 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
SNCAP37840 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC14.58□□□□□ -0.08
SNCAP37840 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SNCAP37840 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SNCAP37840 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SNCAP37840 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
SNCAP37840 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SNCAP37840 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SNCAP37840 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
SNCAP37840 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SNCAP37840 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SNCAP37840 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC14.58□□□□□ -0.08
SNCAP37840 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SNCAP37840 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC14.58□□□□□ -0.08
SNCAP37840 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SNCAP37840 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.08
SNCAP37840 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
SNCAP37840 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC14.58□□□□□ -0.08
SNCAP37840 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC14.58□□□□□ -0.08
SNCAP37840 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC14.58□□□□□ -0.08
SNCAP37840 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SNCAP37840 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC14.58□□□□□ -0.08
SNCAP37840 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SNCAP37840 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
SNCAP37840 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SNCAP37840 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SNCAP37840 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC14.57□□□□□ -0.08
SNCAP37840 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC14.57□□□□□ -0.08
SNCAP37840 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
SNCAP37840 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
SNCAP37840 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms