Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC19.87■□□□□ 0.77
CIITAP33076 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC19.87■□□□□ 0.77
CIITAP33076 AC026396.1-201ENST00000419388 421 ntBASIC19.87■□□□□ 0.77
CIITAP33076 AL020989.1-201ENST00000422979 469 ntBASIC19.87■□□□□ 0.77
CIITAP33076 FAM197Y8-203ENST00000450145 560 ntBASIC19.87■□□□□ 0.77
CIITAP33076 AC018712.1-201ENST00000455767 687 ntBASIC19.87■□□□□ 0.77
CIITAP33076 AC021087.4-201ENST00000563761 564 ntBASIC19.87■□□□□ 0.77
CIITAP33076 PAM16-208ENST00000573553 722 ntTSL 2 BASIC19.87■□□□□ 0.77
CIITAP33076 SLC25A6P4-201ENST00000586535 553 ntBASIC19.87■□□□□ 0.77
CIITAP33076 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC19.87■□□□□ 0.77
CIITAP33076 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
CIITAP33076 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CIITAP33076 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
CIITAP33076 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC19.87■□□□□ 0.77
CIITAP33076 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CIITAP33076 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CIITAP33076 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CIITAP33076 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CIITAP33076 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC19.87■□□□□ 0.77
CIITAP33076 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CIITAP33076 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC19.86■□□□□ 0.77
CIITAP33076 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CIITAP33076 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CIITAP33076 AC134043.2-201ENST00000624206 2238 ntBASIC19.86■□□□□ 0.77
CIITAP33076 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CIITAP33076 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.86■□□□□ 0.77
CIITAP33076 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
CIITAP33076 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CIITAP33076 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
CIITAP33076 HIST2H3DP1-201ENST00000401004 416 ntBASIC19.86■□□□□ 0.77
CIITAP33076 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC19.86■□□□□ 0.77
CIITAP33076 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
CIITAP33076 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC19.86■□□□□ 0.77
CIITAP33076 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC19.86■□□□□ 0.77
CIITAP33076 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CIITAP33076 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC19.86■□□□□ 0.77
CIITAP33076 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC19.86■□□□□ 0.77
CIITAP33076 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.86■□□□□ 0.77
CIITAP33076 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CIITAP33076 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC19.86■□□□□ 0.77
CIITAP33076 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CIITAP33076 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC19.86■□□□□ 0.77
CIITAP33076 AC009336.1-201ENST00000608941 1553 ntBASIC19.86■□□□□ 0.77
CIITAP33076 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CIITAP33076 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
CIITAP33076 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
CIITAP33076 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CIITAP33076 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
CIITAP33076 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC19.85■□□□□ 0.77
CIITAP33076 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC19.85■□□□□ 0.77
CIITAP33076 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CIITAP33076 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
CIITAP33076 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CIITAP33076 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CIITAP33076 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC19.85■□□□□ 0.77
CIITAP33076 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CIITAP33076 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.85■□□□□ 0.77
CIITAP33076 AC068880.1-201ENST00000507289 2297 ntBASIC19.85■□□□□ 0.77
CIITAP33076 AC148477.5-201ENST00000625164 1645 ntBASIC19.85■□□□□ 0.77
CIITAP33076 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
CIITAP33076 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CIITAP33076 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CIITAP33076 MRPL3P1-201ENST00000400109 1033 ntBASIC19.85■□□□□ 0.77
CIITAP33076 KLF4P1-201ENST00000412782 1185 ntBASIC19.85■□□□□ 0.77
CIITAP33076 KRT18P67-201ENST00000432816 1264 ntBASIC19.85■□□□□ 0.77
CIITAP33076 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC19.85■□□□□ 0.77
CIITAP33076 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC19.85■□□□□ 0.77
CIITAP33076 RNPS1P1-201ENST00000507437 918 ntBASIC19.85■□□□□ 0.77
CIITAP33076 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC19.85■□□□□ 0.77
CIITAP33076 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
CIITAP33076 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC19.85■□□□□ 0.77
CIITAP33076 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC19.85■□□□□ 0.77
CIITAP33076 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
CIITAP33076 AL139327.4-201ENST00000612362 153 ntBASIC19.85■□□□□ 0.77
CIITAP33076 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CIITAP33076 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC19.85■□□□□ 0.77
CIITAP33076 AL022326.1-202ENST00000641533 845 ntBASIC19.85■□□□□ 0.77
CIITAP33076 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
CIITAP33076 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CIITAP33076 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC19.85■□□□□ 0.77
CIITAP33076 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
CIITAP33076 GNAS-203ENST00000306120 1878 ntBASIC19.85■□□□□ 0.77
CIITAP33076 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CIITAP33076 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC19.85■□□□□ 0.77
CIITAP33076 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
CIITAP33076 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CIITAP33076 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC19.85■□□□□ 0.77
CIITAP33076 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CIITAP33076 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CIITAP33076 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CIITAP33076 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CIITAP33076 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CIITAP33076 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
CIITAP33076 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC19.84■□□□□ 0.77
CIITAP33076 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CIITAP33076 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CIITAP33076 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CIITAP33076 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
CIITAP33076 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
CIITAP33076 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms