Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 KRT18P67-201ENST00000432816 1264 ntBASIC20.23■□□□□ 0.83
SMARCA1P28370 AC018712.1-201ENST00000455767 687 ntBASIC20.23■□□□□ 0.83
SMARCA1P28370 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMARCA1P28370 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC20.23■□□□□ 0.83
SMARCA1P28370 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC20.23■□□□□ 0.83
SMARCA1P28370 AL662844.1-201ENST00000546340 181 ntBASIC20.23■□□□□ 0.83
SMARCA1P28370 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC20.23■□□□□ 0.83
SMARCA1P28370 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC20.23■□□□□ 0.83
SMARCA1P28370 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC20.23■□□□□ 0.83
SMARCA1P28370 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC20.23■□□□□ 0.83
SMARCA1P28370 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMARCA1P28370 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC20.23■□□□□ 0.83
SMARCA1P28370 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SMARCA1P28370 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC20.23■□□□□ 0.83
SMARCA1P28370 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
SMARCA1P28370 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SMARCA1P28370 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC20.22■□□□□ 0.83
SMARCA1P28370 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SMARCA1P28370 AL138688.1-201ENST00000624851 1594 ntBASIC20.22■□□□□ 0.83
SMARCA1P28370 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SMARCA1P28370 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SMARCA1P28370 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC20.22■□□□□ 0.83
SMARCA1P28370 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SMARCA1P28370 FDX1P1-201ENST00000449115 551 ntBASIC20.22■□□□□ 0.83
SMARCA1P28370 RNPS1P1-201ENST00000507437 918 ntBASIC20.22■□□□□ 0.83
SMARCA1P28370 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC20.22■□□□□ 0.83
SMARCA1P28370 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC20.22■□□□□ 0.83
SMARCA1P28370 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC20.22■□□□□ 0.83
SMARCA1P28370 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC20.22■□□□□ 0.83
SMARCA1P28370 AC148477.5-201ENST00000625164 1645 ntBASIC20.22■□□□□ 0.83
SMARCA1P28370 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SMARCA1P28370 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC20.22■□□□□ 0.83
SMARCA1P28370 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC20.22■□□□□ 0.83
SMARCA1P28370 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC20.22■□□□□ 0.83
SMARCA1P28370 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SMARCA1P28370 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
SMARCA1P28370 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC20.22■□□□□ 0.83
SMARCA1P28370 LYSMD4-203ENST00000378904 2122 ntBASIC20.21■□□□□ 0.83
SMARCA1P28370 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMARCA1P28370 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
SMARCA1P28370 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SMARCA1P28370 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SMARCA1P28370 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
SMARCA1P28370 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMARCA1P28370 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SMARCA1P28370 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
SMARCA1P28370 MED22-202ENST00000371999 987 ntTSL 3 BASIC20.21■□□□□ 0.83
SMARCA1P28370 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC20.21■□□□□ 0.83
SMARCA1P28370 AF186996.4-201ENST00000467186 377 ntBASIC20.21■□□□□ 0.83
SMARCA1P28370 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC20.21■□□□□ 0.83
SMARCA1P28370 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC20.21■□□□□ 0.83
SMARCA1P28370 AC073648.2-201ENST00000510116 352 ntBASIC20.21■□□□□ 0.83
SMARCA1P28370 SLC25A6P4-201ENST00000586535 553 ntBASIC20.21■□□□□ 0.83
SMARCA1P28370 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC20.21■□□□□ 0.83
SMARCA1P28370 TK1-204ENST00000590430 683 ntTSL 3 BASIC20.21■□□□□ 0.83
SMARCA1P28370 MTDHP4-201ENST00000600287 670 ntBASIC20.21■□□□□ 0.83
SMARCA1P28370 AC025062.2-201ENST00000605477 670 ntBASIC20.21■□□□□ 0.83
SMARCA1P28370 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SMARCA1P28370 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMARCA1P28370 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC20.21■□□□□ 0.83
SMARCA1P28370 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMARCA1P28370 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMARCA1P28370 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMARCA1P28370 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SMARCA1P28370 GID4-202ENST00000376345 1391 ntTSL 3 BASIC20.21■□□□□ 0.83
SMARCA1P28370 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
SMARCA1P28370 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMARCA1P28370 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMARCA1P28370 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SMARCA1P28370 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SMARCA1P28370 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMARCA1P28370 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMARCA1P28370 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SMARCA1P28370 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SMARCA1P28370 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
SMARCA1P28370 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC20.2■□□□□ 0.82
SMARCA1P28370 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC20.2■□□□□ 0.82
SMARCA1P28370 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
SMARCA1P28370 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC20.2■□□□□ 0.82
SMARCA1P28370 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMARCA1P28370 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC20.2■□□□□ 0.82
SMARCA1P28370 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC20.2■□□□□ 0.82
SMARCA1P28370 PAM16-208ENST00000573553 722 ntTSL 2 BASIC20.2■□□□□ 0.82
SMARCA1P28370 AL589182.2-201ENST00000619332 1049 ntBASIC20.2■□□□□ 0.82
SMARCA1P28370 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC20.2■□□□□ 0.82
SMARCA1P28370 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SMARCA1P28370 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMARCA1P28370 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SMARCA1P28370 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMARCA1P28370 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMARCA1P28370 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.2■□□□□ 0.82
SMARCA1P28370 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC20.2■□□□□ 0.82
SMARCA1P28370 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
SMARCA1P28370 AC046185.3-201ENST00000623228 1824 ntBASIC20.2■□□□□ 0.82
SMARCA1P28370 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SMARCA1P28370 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC20.2■□□□□ 0.82
SMARCA1P28370 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SMARCA1P28370 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC20.19■□□□□ 0.82
SMARCA1P28370 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SMARCA1P28370 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms