Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HOXC4P09017 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
HOXC4P09017 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HOXC4P09017 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HOXC4P09017 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
HOXC4P09017 AC009947.1-201ENST00000444350 727 ntBASIC17.18■□□□□ 0.34
HOXC4P09017 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HOXC4P09017 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HOXC4P09017 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.18■□□□□ 0.34
HOXC4P09017 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
HOXC4P09017 AL139327.4-201ENST00000612362 153 ntBASIC17.18■□□□□ 0.34
HOXC4P09017 AC097637.2-201ENST00000624096 1997 ntBASIC17.18■□□□□ 0.34
HOXC4P09017 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.18■□□□□ 0.34
HOXC4P09017 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HOXC4P09017 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HOXC4P09017 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.18■□□□□ 0.34
HOXC4P09017 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
HOXC4P09017 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
HOXC4P09017 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HOXC4P09017 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HOXC4P09017 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
HOXC4P09017 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
HOXC4P09017 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.18■□□□□ 0.34
HOXC4P09017 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.18■□□□□ 0.34
HOXC4P09017 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
HOXC4P09017 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HOXC4P09017 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HOXC4P09017 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HOXC4P09017 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
HOXC4P09017 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
HOXC4P09017 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.17■□□□□ 0.34
HOXC4P09017 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HOXC4P09017 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC17.17■□□□□ 0.34
HOXC4P09017 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC17.17■□□□□ 0.34
HOXC4P09017 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
HOXC4P09017 LINC00982-205ENST00000420957 435 ntBASIC17.17■□□□□ 0.34
HOXC4P09017 SLC4A1APP2-201ENST00000424054 1259 ntBASIC17.17■□□□□ 0.34
HOXC4P09017 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
HOXC4P09017 AC006504.4-201ENST00000592118 1568 ntBASIC17.17■□□□□ 0.34
HOXC4P09017 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.17■□□□□ 0.34
HOXC4P09017 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC17.17■□□□□ 0.34
HOXC4P09017 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC17.17■□□□□ 0.34
HOXC4P09017 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.17■□□□□ 0.34
HOXC4P09017 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.17■□□□□ 0.34
HOXC4P09017 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.17■□□□□ 0.34
HOXC4P09017 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.17■□□□□ 0.34
HOXC4P09017 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
HOXC4P09017 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.16■□□□□ 0.34
HOXC4P09017 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HOXC4P09017 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
HOXC4P09017 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
HOXC4P09017 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
HOXC4P09017 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HOXC4P09017 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.16■□□□□ 0.34
HOXC4P09017 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HOXC4P09017 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.16■□□□□ 0.34
HOXC4P09017 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
HOXC4P09017 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HOXC4P09017 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
HOXC4P09017 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
HOXC4P09017 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
HOXC4P09017 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.16■□□□□ 0.34
HOXC4P09017 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC17.16■□□□□ 0.34
HOXC4P09017 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HOXC4P09017 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HOXC4P09017 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.16■□□□□ 0.34
HOXC4P09017 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC17.16■□□□□ 0.34
HOXC4P09017 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.16■□□□□ 0.34
HOXC4P09017 AL805961.1-202ENST00000641562 540 ntBASIC17.16■□□□□ 0.34
HOXC4P09017 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC17.16■□□□□ 0.34
HOXC4P09017 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
HOXC4P09017 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HOXC4P09017 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HOXC4P09017 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HOXC4P09017 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HOXC4P09017 PMS2P7-201ENST00000506558 1336 ntBASIC17.16■□□□□ 0.34
HOXC4P09017 LINC00304-203ENST00000565008 1864 ntBASIC17.16■□□□□ 0.34
HOXC4P09017 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
HOXC4P09017 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
HOXC4P09017 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HOXC4P09017 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC17.15■□□□□ 0.34
HOXC4P09017 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.15■□□□□ 0.34
HOXC4P09017 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC17.15■□□□□ 0.34
HOXC4P09017 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HOXC4P09017 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HOXC4P09017 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.15■□□□□ 0.34
HOXC4P09017 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HOXC4P09017 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
HOXC4P09017 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HOXC4P09017 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
HOXC4P09017 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC17.15■□□□□ 0.34
HOXC4P09017 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HOXC4P09017 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
HOXC4P09017 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
HOXC4P09017 METTL26-205ENST00000397666 726 ntTSL 2 BASIC17.15■□□□□ 0.34
HOXC4P09017 ELK2BP-201ENST00000415014 1224 ntBASIC17.15■□□□□ 0.34
HOXC4P09017 IGHV3-65-201ENST00000523210 341 ntBASIC17.15■□□□□ 0.34
HOXC4P09017 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC17.15■□□□□ 0.34
HOXC4P09017 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC17.15■□□□□ 0.34
HOXC4P09017 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms