Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC21.44■■□□□ 1.02
COL4A1P02462 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
COL4A1P02462 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL4A1P02462 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL4A1P02462 GOLGA6L17P-202ENST00000614358 1398 ntBASIC21.44■■□□□ 1.02
COL4A1P02462 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL4A1P02462 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL4A1P02462 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC21.44■■□□□ 1.02
COL4A1P02462 CNN2P11-201ENST00000429351 262 ntBASIC21.44■■□□□ 1.02
COL4A1P02462 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC21.44■■□□□ 1.02
COL4A1P02462 AC087163.2-201ENST00000457299 853 ntBASIC21.44■■□□□ 1.02
COL4A1P02462 ACTL9-202ENST00000612068 1252 ntBASIC21.44■■□□□ 1.02
COL4A1P02462 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC21.44■■□□□ 1.02
COL4A1P02462 FLJ13224-201ENST00000313737 1514 ntBASIC21.43■■□□□ 1.02
COL4A1P02462 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
COL4A1P02462 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC21.43■■□□□ 1.02
COL4A1P02462 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
COL4A1P02462 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL4A1P02462 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL4A1P02462 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC21.43■■□□□ 1.02
COL4A1P02462 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL4A1P02462 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL4A1P02462 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL4A1P02462 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL4A1P02462 STOM-202ENST00000347359 870 ntTSL 2 BASIC21.43■■□□□ 1.02
COL4A1P02462 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC21.43■■□□□ 1.02
COL4A1P02462 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC21.43■■□□□ 1.02
COL4A1P02462 IGHV3-52-201ENST00000519770 353 ntBASIC21.43■■□□□ 1.02
COL4A1P02462 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC21.43■■□□□ 1.02
COL4A1P02462 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC21.43■■□□□ 1.02
COL4A1P02462 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL4A1P02462 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL4A1P02462 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC21.43■■□□□ 1.02
COL4A1P02462 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC21.43■■□□□ 1.02
COL4A1P02462 KRT18P28-201ENST00000453838 1332 ntBASIC21.42■■□□□ 1.02
COL4A1P02462 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL4A1P02462 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC21.42■■□□□ 1.02
COL4A1P02462 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
COL4A1P02462 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC21.42■■□□□ 1.02
COL4A1P02462 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC21.42■■□□□ 1.02
COL4A1P02462 PXK-206ENST00000463280 2825 ntTSL 2 BASIC21.42■■□□□ 1.02
COL4A1P02462 DDT-204ENST00000404092 805 ntTSL 3 BASIC21.42■■□□□ 1.02
COL4A1P02462 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC21.42■■□□□ 1.02
COL4A1P02462 FAM58CP-201ENST00000435741 640 ntBASIC21.42■■□□□ 1.02
COL4A1P02462 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC21.42■■□□□ 1.02
COL4A1P02462 TK1-204ENST00000590430 683 ntTSL 3 BASIC21.42■■□□□ 1.02
COL4A1P02462 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC21.42■■□□□ 1.02
COL4A1P02462 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC21.42■■□□□ 1.02
COL4A1P02462 LINC00304-203ENST00000565008 1864 ntBASIC21.42■■□□□ 1.02
COL4A1P02462 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL4A1P02462 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL4A1P02462 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC21.42■■□□□ 1.02
COL4A1P02462 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
COL4A1P02462 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC21.42■■□□□ 1.02
COL4A1P02462 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC21.42■■□□□ 1.02
COL4A1P02462 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
COL4A1P02462 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL4A1P02462 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL4A1P02462 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL4A1P02462 AC006116.8-202ENST00000587620 1550 ntBASIC21.41■■□□□ 1.02
COL4A1P02462 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC21.41■■□□□ 1.02
COL4A1P02462 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL4A1P02462 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
COL4A1P02462 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL4A1P02462 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL4A1P02462 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
COL4A1P02462 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL4A1P02462 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL4A1P02462 CITED2-204ENST00000618718 901 ntTSL 2 BASIC21.41■■□□□ 1.02
COL4A1P02462 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC21.41■■□□□ 1.02
COL4A1P02462 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL4A1P02462 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL4A1P02462 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL4A1P02462 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC21.41■■□□□ 1.02
COL4A1P02462 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC21.41■■□□□ 1.02
COL4A1P02462 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
COL4A1P02462 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC21.41■■□□□ 1.02
COL4A1P02462 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL4A1P02462 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC21.41■■□□□ 1.02
COL4A1P02462 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL4A1P02462 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC21.41■■□□□ 1.02
COL4A1P02462 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL4A1P02462 AC025580.3-201ENST00000617932 1424 ntBASIC21.41■■□□□ 1.02
COL4A1P02462 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL4A1P02462 AC107918.2-201ENST00000530817 355 ntBASIC21.4■■□□□ 1.02
COL4A1P02462 AC096734.2-201ENST00000562054 433 ntBASIC21.4■■□□□ 1.02
COL4A1P02462 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC21.4■■□□□ 1.02
COL4A1P02462 AC138028.4-201ENST00000564984 1845 ntBASIC21.4■■□□□ 1.02
COL4A1P02462 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC21.4■■□□□ 1.02
COL4A1P02462 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC21.4■■□□□ 1.02
COL4A1P02462 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL4A1P02462 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
COL4A1P02462 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL4A1P02462 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL4A1P02462 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC21.4■■□□□ 1.02
COL4A1P02462 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL4A1P02462 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL4A1P02462 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
COL4A1P02462 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
COL4A1P02462 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms