Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CLDN9O95484 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLDN9O95484 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLDN9O95484 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLDN9O95484 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CLDN9O95484 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLDN9O95484 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CLDN9O95484 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
CLDN9O95484 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.11■□□□□ 0.33
CLDN9O95484 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CLDN9O95484 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.11■□□□□ 0.33
CLDN9O95484 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLDN9O95484 AL645929.1-201ENST00000420084 975 ntBASIC17.11■□□□□ 0.33
CLDN9O95484 AC096633.1-201ENST00000422446 749 ntBASIC17.11■□□□□ 0.33
CLDN9O95484 TMPOP1-202ENST00000424642 1267 ntBASIC17.11■□□□□ 0.33
CLDN9O95484 SAPCD2P2-201ENST00000431719 1174 ntBASIC17.11■□□□□ 0.33
CLDN9O95484 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC17.11■□□□□ 0.33
CLDN9O95484 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CLDN9O95484 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC17.11■□□□□ 0.33
CLDN9O95484 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CLDN9O95484 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC17.11■□□□□ 0.33
CLDN9O95484 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CLDN9O95484 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLDN9O95484 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLDN9O95484 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CLDN9O95484 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLDN9O95484 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.11■□□□□ 0.33
CLDN9O95484 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CLDN9O95484 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.11■□□□□ 0.33
CLDN9O95484 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CLDN9O95484 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLDN9O95484 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
CLDN9O95484 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLDN9O95484 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.1■□□□□ 0.33
CLDN9O95484 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC17.1■□□□□ 0.33
CLDN9O95484 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLDN9O95484 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLDN9O95484 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
CLDN9O95484 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLDN9O95484 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLDN9O95484 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CLDN9O95484 AC005104.2-201ENST00000427818 678 ntBASIC17.1■□□□□ 0.33
CLDN9O95484 GUSBP12-201ENST00000513727 720 ntBASIC17.1■□□□□ 0.33
CLDN9O95484 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC17.1■□□□□ 0.33
CLDN9O95484 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLDN9O95484 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CLDN9O95484 AC097374.2-201ENST00000618617 1306 ntBASIC17.1■□□□□ 0.33
CLDN9O95484 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLDN9O95484 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CLDN9O95484 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.1■□□□□ 0.33
CLDN9O95484 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
CLDN9O95484 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.1■□□□□ 0.33
CLDN9O95484 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLDN9O95484 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLDN9O95484 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CLDN9O95484 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN9O95484 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN9O95484 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN9O95484 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.09■□□□□ 0.33
CLDN9O95484 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.09■□□□□ 0.33
CLDN9O95484 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN9O95484 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN9O95484 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CLDN9O95484 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN9O95484 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN9O95484 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN9O95484 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN9O95484 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CLDN9O95484 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN9O95484 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CLDN9O95484 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN9O95484 DAP-202ENST00000432074 1048 ntTSL 2 BASIC17.09■□□□□ 0.33
CLDN9O95484 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC17.09■□□□□ 0.33
CLDN9O95484 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN9O95484 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CLDN9O95484 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC17.09■□□□□ 0.33
CLDN9O95484 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC17.09■□□□□ 0.33
CLDN9O95484 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.09■□□□□ 0.33
CLDN9O95484 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN9O95484 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN9O95484 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.09■□□□□ 0.33
CLDN9O95484 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CLDN9O95484 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
CLDN9O95484 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.33
CLDN9O95484 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.08■□□□□ 0.33
CLDN9O95484 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CLDN9O95484 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CLDN9O95484 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC17.08■□□□□ 0.33
CLDN9O95484 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
CLDN9O95484 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.33
CLDN9O95484 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CLDN9O95484 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CLDN9O95484 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC17.08■□□□□ 0.33
CLDN9O95484 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
CLDN9O95484 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CLDN9O95484 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.08■□□□□ 0.32
CLDN9O95484 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.08■□□□□ 0.32
CLDN9O95484 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
CLDN9O95484 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.08■□□□□ 0.32
CLDN9O95484 TSPY22P-201ENST00000427496 604 ntBASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms