Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
USH2AO75445 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC7.8□□□□□ -1.16
USH2AO75445 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
USH2AO75445 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
USH2AO75445 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
USH2AO75445 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC7.8□□□□□ -1.16
USH2AO75445 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC7.8□□□□□ -1.16
USH2AO75445 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
USH2AO75445 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
USH2AO75445 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
USH2AO75445 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC7.8□□□□□ -1.16
USH2AO75445 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC7.8□□□□□ -1.16
USH2AO75445 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC7.8□□□□□ -1.16
USH2AO75445 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC7.8□□□□□ -1.16
USH2AO75445 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC7.8□□□□□ -1.16
USH2AO75445 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC7.8□□□□□ -1.16
USH2AO75445 COX5A-202ENST00000562233 441 ntTSL 3 BASIC7.8□□□□□ -1.16
USH2AO75445 AC004790.1-201ENST00000612686 536 ntBASIC7.8□□□□□ -1.16
USH2AO75445 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC7.8□□□□□ -1.16
USH2AO75445 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
USH2AO75445 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC7.8□□□□□ -1.16
USH2AO75445 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
USH2AO75445 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC7.8□□□□□ -1.16
USH2AO75445 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
USH2AO75445 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
USH2AO75445 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC7.8□□□□□ -1.16
USH2AO75445 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC7.8□□□□□ -1.16
USH2AO75445 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC7.8□□□□□ -1.16
USH2AO75445 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC7.8□□□□□ -1.16
USH2AO75445 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC7.8□□□□□ -1.16
USH2AO75445 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC7.8□□□□□ -1.16
USH2AO75445 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC7.8□□□□□ -1.16
USH2AO75445 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC7.8□□□□□ -1.16
USH2AO75445 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC7.8□□□□□ -1.16
USH2AO75445 AL049812.1-201ENST00000432563 2267 ntBASIC7.8□□□□□ -1.16
USH2AO75445 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
USH2AO75445 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC7.79□□□□□ -1.16
USH2AO75445 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC7.79□□□□□ -1.16
USH2AO75445 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC7.79□□□□□ -1.16
USH2AO75445 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC7.79□□□□□ -1.16
USH2AO75445 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC7.79□□□□□ -1.16
USH2AO75445 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC7.79□□□□□ -1.16
USH2AO75445 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC7.79□□□□□ -1.16
USH2AO75445 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
USH2AO75445 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC7.79□□□□□ -1.16
USH2AO75445 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC7.79□□□□□ -1.16
USH2AO75445 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
USH2AO75445 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC7.79□□□□□ -1.16
USH2AO75445 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
USH2AO75445 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC7.79□□□□□ -1.16
USH2AO75445 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
USH2AO75445 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC7.79□□□□□ -1.16
USH2AO75445 CD7-202ENST00000578509 925 ntTSL 3 BASIC7.79□□□□□ -1.16
USH2AO75445 CHCHD2P3-201ENST00000603038 451 ntBASIC7.79□□□□□ -1.16
USH2AO75445 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC7.79□□□□□ -1.16
USH2AO75445 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC7.79□□□□□ -1.16
USH2AO75445 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC7.79□□□□□ -1.16
USH2AO75445 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC7.79□□□□□ -1.16
USH2AO75445 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC7.79□□□□□ -1.16
USH2AO75445 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
USH2AO75445 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
USH2AO75445 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC7.79□□□□□ -1.16
USH2AO75445 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
USH2AO75445 AC098614.1-201ENST00000368528 745 ntBASIC7.79□□□□□ -1.16
USH2AO75445 AC002056.1-201ENST00000395613 760 ntBASIC7.79□□□□□ -1.16
USH2AO75445 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC7.79□□□□□ -1.16
USH2AO75445 GNAQP1-201ENST00000444815 1067 ntBASIC7.79□□□□□ -1.16
USH2AO75445 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC7.79□□□□□ -1.16
USH2AO75445 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
USH2AO75445 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC7.79□□□□□ -1.16
USH2AO75445 AL109936.8-201ENST00000641772 604 ntBASIC7.79□□□□□ -1.16
USH2AO75445 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC7.79□□□□□ -1.16
USH2AO75445 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
USH2AO75445 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC7.79□□□□□ -1.16
USH2AO75445 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC7.79□□□□□ -1.16
USH2AO75445 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC7.79□□□□□ -1.16
USH2AO75445 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC7.79□□□□□ -1.16
USH2AO75445 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC7.79□□□□□ -1.16
USH2AO75445 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
USH2AO75445 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC7.79□□□□□ -1.16
USH2AO75445 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
USH2AO75445 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC7.79□□□□□ -1.16
USH2AO75445 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC7.79□□□□□ -1.16
USH2AO75445 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC7.79□□□□□ -1.16
USH2AO75445 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC7.79□□□□□ -1.16
USH2AO75445 RN7SL190P-201ENST00000582519 257 ntBASIC7.79□□□□□ -1.16
USH2AO75445 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC7.79□□□□□ -1.16
USH2AO75445 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC7.79□□□□□ -1.16
USH2AO75445 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
USH2AO75445 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC7.78□□□□□ -1.16
USH2AO75445 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
USH2AO75445 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC7.78□□□□□ -1.16
USH2AO75445 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC7.78□□□□□ -1.16
USH2AO75445 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
USH2AO75445 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC7.78□□□□□ -1.16
USH2AO75445 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC7.78□□□□□ -1.16
USH2AO75445 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC7.78□□□□□ -1.16
USH2AO75445 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
USH2AO75445 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC7.78□□□□□ -1.16
USH2AO75445 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms