Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC22.11■■□□□ 1.13
CACNA1FO60840 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CACNA1FO60840 TPR-209ENST00000613151 2478 ntTSL 5 BASIC22.11■■□□□ 1.13
CACNA1FO60840 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC22.11■■□□□ 1.13
CACNA1FO60840 AC097637.2-201ENST00000624096 1997 ntBASIC22.11■■□□□ 1.13
CACNA1FO60840 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC22.1■■□□□ 1.13
CACNA1FO60840 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CACNA1FO60840 AL022342.1-201ENST00000400363 863 ntBASIC22.1■■□□□ 1.13
CACNA1FO60840 RNA5SP415-201ENST00000517246 115 ntBASIC22.1■■□□□ 1.13
CACNA1FO60840 CD63-204ENST00000546939 779 ntTSL 3 BASIC22.1■■□□□ 1.13
CACNA1FO60840 AL049840.3-201ENST00000602669 611 ntBASIC22.1■■□□□ 1.13
CACNA1FO60840 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
CACNA1FO60840 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CACNA1FO60840 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
CACNA1FO60840 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC22.1■■□□□ 1.13
CACNA1FO60840 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CACNA1FO60840 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC22.1■■□□□ 1.13
CACNA1FO60840 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC22.1■■□□□ 1.13
CACNA1FO60840 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CACNA1FO60840 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC22.1■■□□□ 1.13
CACNA1FO60840 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC22.1■■□□□ 1.13
CACNA1FO60840 MOK-208ENST00000519058 917 ntTSL 2 BASIC22.1■■□□□ 1.13
CACNA1FO60840 AC105339.3-201ENST00000560043 636 ntBASIC22.1■■□□□ 1.13
CACNA1FO60840 TCAP-202ENST00000578283 583 ntTSL 5 BASIC22.1■■□□□ 1.13
CACNA1FO60840 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC22.1■■□□□ 1.13
CACNA1FO60840 AC010654.1-201ENST00000615722 808 ntBASIC22.1■■□□□ 1.13
CACNA1FO60840 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CACNA1FO60840 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CACNA1FO60840 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CACNA1FO60840 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
CACNA1FO60840 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC22.09■■□□□ 1.13
CACNA1FO60840 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CACNA1FO60840 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC22.09■■□□□ 1.13
CACNA1FO60840 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC22.09■■□□□ 1.13
CACNA1FO60840 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CACNA1FO60840 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC22.09■■□□□ 1.13
CACNA1FO60840 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
CACNA1FO60840 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC22.09■■□□□ 1.13
CACNA1FO60840 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC22.09■■□□□ 1.13
CACNA1FO60840 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
CACNA1FO60840 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC22.09■■□□□ 1.13
CACNA1FO60840 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC22.09■■□□□ 1.13
CACNA1FO60840 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CACNA1FO60840 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC22.08■■□□□ 1.13
CACNA1FO60840 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC22.08■■□□□ 1.13
CACNA1FO60840 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CACNA1FO60840 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC22.08■■□□□ 1.13
CACNA1FO60840 COPE-211ENST00000600932 1144 ntTSL 5 BASIC22.08■■□□□ 1.13
CACNA1FO60840 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC22.08■■□□□ 1.13
CACNA1FO60840 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC22.08■■□□□ 1.13
CACNA1FO60840 NME4-212ENST00000621774 904 ntTSL 3 BASIC22.08■■□□□ 1.13
CACNA1FO60840 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC22.08■■□□□ 1.13
CACNA1FO60840 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
CACNA1FO60840 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC22.08■■□□□ 1.13
CACNA1FO60840 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC22.08■■□□□ 1.13
CACNA1FO60840 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC22.08■■□□□ 1.13
CACNA1FO60840 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC22.08■■□□□ 1.12
CACNA1FO60840 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC22.08■■□□□ 1.12
CACNA1FO60840 CSF3-203ENST00000394148 622 ntTSL 3 BASIC22.08■■□□□ 1.12
CACNA1FO60840 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC22.08■■□□□ 1.12
CACNA1FO60840 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
CACNA1FO60840 AL353135.1-201ENST00000606729 504 ntBASIC22.08■■□□□ 1.12
CACNA1FO60840 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC22.08■■□□□ 1.12
CACNA1FO60840 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC22.08■■□□□ 1.12
CACNA1FO60840 CD276-203ENST00000537340 2439 ntTSL 2 BASIC22.08■■□□□ 1.12
CACNA1FO60840 AP002414.3-201ENST00000589352 1468 ntBASIC22.08■■□□□ 1.12
CACNA1FO60840 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC22.08■■□□□ 1.12
CACNA1FO60840 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
CACNA1FO60840 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC22.07■■□□□ 1.12
CACNA1FO60840 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC22.07■■□□□ 1.12
CACNA1FO60840 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC22.07■■□□□ 1.12
CACNA1FO60840 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC22.07■■□□□ 1.12
CACNA1FO60840 AF228730.7-201ENST00000641842 219 ntBASIC22.07■■□□□ 1.12
CACNA1FO60840 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
CACNA1FO60840 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC22.07■■□□□ 1.12
CACNA1FO60840 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC22.07■■□□□ 1.12
CACNA1FO60840 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
CACNA1FO60840 SLC25A1P1-201ENST00000528351 927 ntBASIC22.07■■□□□ 1.12
CACNA1FO60840 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC22.07■■□□□ 1.12
CACNA1FO60840 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CACNA1FO60840 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
CACNA1FO60840 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC22.06■■□□□ 1.12
CACNA1FO60840 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CACNA1FO60840 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CACNA1FO60840 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CACNA1FO60840 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC22.06■■□□□ 1.12
CACNA1FO60840 AC007613.1-201ENST00000572811 2597 ntBASIC22.06■■□□□ 1.12
CACNA1FO60840 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CACNA1FO60840 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC22.06■■□□□ 1.12
CACNA1FO60840 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC22.06■■□□□ 1.12
CACNA1FO60840 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CACNA1FO60840 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CACNA1FO60840 AC092910.1-201ENST00000482027 1129 ntBASIC22.06■■□□□ 1.12
CACNA1FO60840 AC008667.4-201ENST00000607370 168 ntBASIC22.06■■□□□ 1.12
CACNA1FO60840 Z83851.2-201ENST00000609564 659 ntBASIC22.06■■□□□ 1.12
CACNA1FO60840 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
CACNA1FO60840 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC22.05■■□□□ 1.12
CACNA1FO60840 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
CACNA1FO60840 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC22.05■■□□□ 1.12
CACNA1FO60840 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC22.05■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms