Protein–RNA interactions for Protein: O60264

SMARCA5, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5, humanhuman

Predicted RBP Predictions only

Length 1,052 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA5O60264 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC21.8■■□□□ 1.08
SMARCA5O60264 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC21.8■■□□□ 1.08
SMARCA5O60264 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMARCA5O60264 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC21.8■■□□□ 1.08
SMARCA5O60264 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC21.8■■□□□ 1.08
SMARCA5O60264 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMARCA5O60264 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMARCA5O60264 CROCCP2-202ENST00000412962 2773 ntBASIC21.8■■□□□ 1.08
SMARCA5O60264 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMARCA5O60264 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SMARCA5O60264 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SMARCA5O60264 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMARCA5O60264 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMARCA5O60264 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMARCA5O60264 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC21.79■■□□□ 1.08
SMARCA5O60264 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
SMARCA5O60264 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMARCA5O60264 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SMARCA5O60264 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SMARCA5O60264 CEP83-AS1-201ENST00000623122 2482 ntBASIC21.79■■□□□ 1.08
SMARCA5O60264 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC21.79■■□□□ 1.08
SMARCA5O60264 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMARCA5O60264 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC21.79■■□□□ 1.08
SMARCA5O60264 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
SMARCA5O60264 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC21.79■■□□□ 1.08
SMARCA5O60264 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMARCA5O60264 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC21.79■■□□□ 1.08
SMARCA5O60264 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC21.79■■□□□ 1.08
SMARCA5O60264 CDV3-207ENST00000508481 661 ntTSL 3 BASIC21.79■■□□□ 1.08
SMARCA5O60264 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC21.79■■□□□ 1.08
SMARCA5O60264 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC21.79■■□□□ 1.08
SMARCA5O60264 AC019129.2-201ENST00000609837 1235 ntBASIC21.79■■□□□ 1.08
SMARCA5O60264 LINC01451-201ENST00000623792 534 ntBASIC21.79■■□□□ 1.08
SMARCA5O60264 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
SMARCA5O60264 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMARCA5O60264 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC21.79■■□□□ 1.08
SMARCA5O60264 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC21.79■■□□□ 1.08
SMARCA5O60264 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC21.79■■□□□ 1.08
SMARCA5O60264 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMARCA5O60264 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMARCA5O60264 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SMARCA5O60264 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SMARCA5O60264 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC21.78■■□□□ 1.08
SMARCA5O60264 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SMARCA5O60264 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC21.78■■□□□ 1.08
SMARCA5O60264 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMARCA5O60264 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
SMARCA5O60264 TP73-AS1-210ENST00000637775 1455 ntBASIC21.78■■□□□ 1.08
SMARCA5O60264 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC21.78■■□□□ 1.08
SMARCA5O60264 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SMARCA5O60264 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC21.78■■□□□ 1.08
SMARCA5O60264 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
SMARCA5O60264 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMARCA5O60264 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
SMARCA5O60264 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMARCA5O60264 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMARCA5O60264 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMARCA5O60264 MINOS1P3-201ENST00000457048 203 ntBASIC21.78■■□□□ 1.08
SMARCA5O60264 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC21.78■■□□□ 1.08
SMARCA5O60264 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC21.78■■□□□ 1.08
SMARCA5O60264 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC21.78■■□□□ 1.08
SMARCA5O60264 Z69720.1-201ENST00000601483 472 ntBASIC21.78■■□□□ 1.08
SMARCA5O60264 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC21.78■■□□□ 1.08
SMARCA5O60264 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMARCA5O60264 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC21.78■■□□□ 1.08
SMARCA5O60264 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMARCA5O60264 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMARCA5O60264 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
SMARCA5O60264 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SMARCA5O60264 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC21.77■■□□□ 1.08
SMARCA5O60264 LYSMD4-203ENST00000378904 2122 ntBASIC21.77■■□□□ 1.08
SMARCA5O60264 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMARCA5O60264 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SMARCA5O60264 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC21.77■■□□□ 1.08
SMARCA5O60264 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
SMARCA5O60264 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMARCA5O60264 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC21.77■■□□□ 1.08
SMARCA5O60264 WAC-202ENST00000347934 2839 ntTSL 5 BASIC21.77■■□□□ 1.08
SMARCA5O60264 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMARCA5O60264 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMARCA5O60264 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMARCA5O60264 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMARCA5O60264 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SMARCA5O60264 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMARCA5O60264 RCN1P2-201ENST00000398357 915 ntBASIC21.77■■□□□ 1.08
SMARCA5O60264 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC21.77■■□□□ 1.08
SMARCA5O60264 AC005104.2-201ENST00000427818 678 ntBASIC21.77■■□□□ 1.08
SMARCA5O60264 VENTXP7-201ENST00000475503 772 ntBASIC21.77■■□□□ 1.08
SMARCA5O60264 AC096582.2-201ENST00000510860 516 ntBASIC21.77■■□□□ 1.08
SMARCA5O60264 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SMARCA5O60264 PNN-202ENST00000553331 656 ntTSL 3 BASIC21.77■■□□□ 1.08
SMARCA5O60264 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC21.77■■□□□ 1.08
SMARCA5O60264 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC21.77■■□□□ 1.08
SMARCA5O60264 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
SMARCA5O60264 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
SMARCA5O60264 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC21.77■■□□□ 1.08
SMARCA5O60264 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
SMARCA5O60264 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC21.77■■□□□ 1.08
SMARCA5O60264 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC21.77■■□□□ 1.08
SMARCA5O60264 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms