Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
SSX4O60224 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SSX4O60224 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC16.09■□□□□ 0.17
SSX4O60224 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SSX4O60224 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC16.09■□□□□ 0.17
SSX4O60224 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC16.09■□□□□ 0.17
SSX4O60224 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC16.09■□□□□ 0.17
SSX4O60224 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SSX4O60224 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC16.09■□□□□ 0.17
SSX4O60224 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
SSX4O60224 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
SSX4O60224 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.09■□□□□ 0.17
SSX4O60224 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SSX4O60224 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SSX4O60224 AC068418.2-201ENST00000577309 3703 ntBASIC16.09■□□□□ 0.17
SSX4O60224 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SSX4O60224 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
SSX4O60224 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC16.09■□□□□ 0.17
SSX4O60224 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC16.09■□□□□ 0.17
SSX4O60224 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.08■□□□□ 0.17
SSX4O60224 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC16.08■□□□□ 0.17
SSX4O60224 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.17
SSX4O60224 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
SSX4O60224 DOC2GP-204ENST00000639052 2548 ntBASIC16.08■□□□□ 0.17
SSX4O60224 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
SSX4O60224 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.08■□□□□ 0.16
SSX4O60224 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SSX4O60224 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
SSX4O60224 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SSX4O60224 BUB3-202ENST00000368859 667 ntTSL 3 BASIC16.08■□□□□ 0.16
SSX4O60224 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SSX4O60224 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SSX4O60224 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SSX4O60224 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC16.08■□□□□ 0.16
SSX4O60224 KRT18P38-201ENST00000449496 1282 ntBASIC16.08■□□□□ 0.16
SSX4O60224 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC16.08■□□□□ 0.16
SSX4O60224 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC16.08■□□□□ 0.16
SSX4O60224 AC008622.2-201ENST00000617006 1229 ntBASIC16.08■□□□□ 0.16
SSX4O60224 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SSX4O60224 AC105020.1-201ENST00000435356 2205 ntBASIC16.08■□□□□ 0.16
SSX4O60224 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SSX4O60224 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SSX4O60224 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SSX4O60224 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC16.08■□□□□ 0.16
SSX4O60224 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SSX4O60224 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SSX4O60224 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SSX4O60224 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC16.08■□□□□ 0.16
SSX4O60224 AC103702.1-201ENST00000548801 2630 ntBASIC16.08■□□□□ 0.16
SSX4O60224 PCDHA1-201ENST00000378133 2726 ntBASIC16.08■□□□□ 0.16
SSX4O60224 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SSX4O60224 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.08■□□□□ 0.16
SSX4O60224 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
SSX4O60224 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SSX4O60224 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SSX4O60224 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
SSX4O60224 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC16.08■□□□□ 0.16
SSX4O60224 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.07■□□□□ 0.16
SSX4O60224 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.07■□□□□ 0.16
SSX4O60224 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
SSX4O60224 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SSX4O60224 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SSX4O60224 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SSX4O60224 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.07■□□□□ 0.16
SSX4O60224 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
SSX4O60224 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC16.07■□□□□ 0.16
SSX4O60224 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SSX4O60224 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SSX4O60224 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.07■□□□□ 0.16
SSX4O60224 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC16.07■□□□□ 0.16
SSX4O60224 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SSX4O60224 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC16.07■□□□□ 0.16
SSX4O60224 SNX5-210ENST00000481323 562 ntTSL 3 BASIC16.07■□□□□ 0.16
SSX4O60224 VENTXP5-201ENST00000523979 775 ntBASIC16.07■□□□□ 0.16
SSX4O60224 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC16.07■□□□□ 0.16
SSX4O60224 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SSX4O60224 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
SSX4O60224 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.07■□□□□ 0.16
SSX4O60224 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC16.07■□□□□ 0.16
SSX4O60224 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SSX4O60224 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC16.07■□□□□ 0.16
SSX4O60224 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SSX4O60224 AL121761.2-201ENST00000598007 1648 ntBASIC16.07■□□□□ 0.16
SSX4O60224 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SSX4O60224 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SSX4O60224 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC16.07■□□□□ 0.16
SSX4O60224 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SSX4O60224 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC16.07■□□□□ 0.16
SSX4O60224 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SSX4O60224 ABR-203ENST00000536794 2213 ntTSL 2 BASIC16.07■□□□□ 0.16
SSX4O60224 CROCCP2-202ENST00000412962 2773 ntBASIC16.07■□□□□ 0.16
SSX4O60224 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
SSX4O60224 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SSX4O60224 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SSX4O60224 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
SSX4O60224 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
SSX4O60224 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.06■□□□□ 0.16
SSX4O60224 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.06■□□□□ 0.16
SSX4O60224 PGR-209ENST00000617858 2816 ntTSL 5 BASIC16.06■□□□□ 0.16
SSX4O60224 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms