Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.04■□□□□ 0.32
SLC28A1O00337 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SLC28A1O00337 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SLC28A1O00337 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.04■□□□□ 0.32
SLC28A1O00337 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SLC28A1O00337 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC17.04■□□□□ 0.32
SLC28A1O00337 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SLC28A1O00337 AC012313.1-201ENST00000593393 3059 ntBASIC17.03■□□□□ 0.32
SLC28A1O00337 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SLC28A1O00337 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SLC28A1O00337 AD000864.1-201ENST00000624076 2295 ntBASIC17.03■□□□□ 0.32
SLC28A1O00337 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SLC28A1O00337 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SLC28A1O00337 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SLC28A1O00337 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SLC28A1O00337 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SLC28A1O00337 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.03■□□□□ 0.32
SLC28A1O00337 MIR662-201ENST00000384847 95 ntBASIC17.03■□□□□ 0.32
SLC28A1O00337 MTCL1P1-201ENST00000446207 792 ntBASIC17.03■□□□□ 0.32
SLC28A1O00337 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.03■□□□□ 0.32
SLC28A1O00337 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC17.03■□□□□ 0.32
SLC28A1O00337 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SLC28A1O00337 GPR32P1-201ENST00000601788 811 ntBASIC17.03■□□□□ 0.32
SLC28A1O00337 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
SLC28A1O00337 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SLC28A1O00337 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SLC28A1O00337 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SLC28A1O00337 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SLC28A1O00337 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
SLC28A1O00337 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
SLC28A1O00337 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SLC28A1O00337 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SLC28A1O00337 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SLC28A1O00337 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SLC28A1O00337 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
SLC28A1O00337 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SLC28A1O00337 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SLC28A1O00337 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SLC28A1O00337 AC009053.2-201ENST00000563701 2365 ntBASIC17.02■□□□□ 0.32
SLC28A1O00337 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC17.02■□□□□ 0.32
SLC28A1O00337 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SLC28A1O00337 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
SLC28A1O00337 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SLC28A1O00337 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SLC28A1O00337 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SLC28A1O00337 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SLC28A1O00337 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
SLC28A1O00337 TERF1P1-201ENST00000311003 1181 ntBASIC17.02■□□□□ 0.32
SLC28A1O00337 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC17.02■□□□□ 0.32
SLC28A1O00337 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SLC28A1O00337 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SLC28A1O00337 AC068472.1-201ENST00000474589 881 ntBASIC17.02■□□□□ 0.32
SLC28A1O00337 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC17.02■□□□□ 0.32
SLC28A1O00337 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.02■□□□□ 0.32
SLC28A1O00337 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SLC28A1O00337 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC17.02■□□□□ 0.32
SLC28A1O00337 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SLC28A1O00337 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SLC28A1O00337 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
SLC28A1O00337 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.02■□□□□ 0.32
SLC28A1O00337 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SLC28A1O00337 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.02■□□□□ 0.31
SLC28A1O00337 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SLC28A1O00337 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.02■□□□□ 0.31
SLC28A1O00337 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SLC28A1O00337 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.02■□□□□ 0.31
SLC28A1O00337 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
SLC28A1O00337 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.02■□□□□ 0.31
SLC28A1O00337 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
SLC28A1O00337 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
SLC28A1O00337 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
SLC28A1O00337 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.01■□□□□ 0.31
SLC28A1O00337 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SLC28A1O00337 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.01■□□□□ 0.31
SLC28A1O00337 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
SLC28A1O00337 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SLC28A1O00337 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SLC28A1O00337 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SLC28A1O00337 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SLC28A1O00337 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SLC28A1O00337 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SLC28A1O00337 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.01■□□□□ 0.31
SLC28A1O00337 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
SLC28A1O00337 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.01■□□□□ 0.31
SLC28A1O00337 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SLC28A1O00337 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.01■□□□□ 0.31
SLC28A1O00337 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
SLC28A1O00337 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.01■□□□□ 0.31
SLC28A1O00337 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SLC28A1O00337 HOMER2P1-201ENST00000455653 964 ntBASIC17.01■□□□□ 0.31
SLC28A1O00337 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
SLC28A1O00337 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.01■□□□□ 0.31
SLC28A1O00337 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.01■□□□□ 0.31
SLC28A1O00337 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.01■□□□□ 0.31
SLC28A1O00337 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
SLC28A1O00337 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.01■□□□□ 0.31
SLC28A1O00337 AC097493.4-201ENST00000641197 219 ntBASIC17.01■□□□□ 0.31
SLC28A1O00337 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SLC28A1O00337 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SLC28A1O00337 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms