Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC18.21■□□□□ 0.51
VPS28Q9UK41 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.21■□□□□ 0.51
VPS28Q9UK41 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.21■□□□□ 0.51
VPS28Q9UK41 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC18.21■□□□□ 0.51
VPS28Q9UK41 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VPS28Q9UK41 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS28Q9UK41 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS28Q9UK41 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC18.21■□□□□ 0.51
VPS28Q9UK41 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC18.21■□□□□ 0.51
VPS28Q9UK41 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC18.21■□□□□ 0.51
VPS28Q9UK41 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.21■□□□□ 0.51
VPS28Q9UK41 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC18.21■□□□□ 0.51
VPS28Q9UK41 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC18.21■□□□□ 0.51
VPS28Q9UK41 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC18.21■□□□□ 0.51
VPS28Q9UK41 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VPS28Q9UK41 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VPS28Q9UK41 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.21■□□□□ 0.51
VPS28Q9UK41 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VPS28Q9UK41 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC18.21■□□□□ 0.51
VPS28Q9UK41 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC18.21■□□□□ 0.51
VPS28Q9UK41 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.21■□□□□ 0.51
VPS28Q9UK41 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS28Q9UK41 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC18.21■□□□□ 0.51
VPS28Q9UK41 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VPS28Q9UK41 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS28Q9UK41 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
VPS28Q9UK41 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS28Q9UK41 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS28Q9UK41 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC18.21■□□□□ 0.51
VPS28Q9UK41 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VPS28Q9UK41 AC097374.2-201ENST00000618617 1306 ntBASIC18.21■□□□□ 0.51
VPS28Q9UK41 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
VPS28Q9UK41 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.21■□□□□ 0.5
VPS28Q9UK41 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC18.21■□□□□ 0.5
VPS28Q9UK41 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
VPS28Q9UK41 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.5
VPS28Q9UK41 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VPS28Q9UK41 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC18.2■□□□□ 0.5
VPS28Q9UK41 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS28Q9UK41 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS28Q9UK41 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS28Q9UK41 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS28Q9UK41 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.2■□□□□ 0.5
VPS28Q9UK41 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC18.2■□□□□ 0.5
VPS28Q9UK41 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS28Q9UK41 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS28Q9UK41 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS28Q9UK41 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS28Q9UK41 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC18.2■□□□□ 0.5
VPS28Q9UK41 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS28Q9UK41 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VPS28Q9UK41 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC18.2■□□□□ 0.5
VPS28Q9UK41 LSM5-204ENST00000409909 740 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS28Q9UK41 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS28Q9UK41 AC007967.3-201ENST00000434308 558 ntBASIC18.2■□□□□ 0.5
VPS28Q9UK41 EMBP1-201ENST00000458200 901 ntBASIC18.2■□□□□ 0.5
VPS28Q9UK41 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC18.2■□□□□ 0.5
VPS28Q9UK41 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VPS28Q9UK41 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
VPS28Q9UK41 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS28Q9UK41 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC18.2■□□□□ 0.5
VPS28Q9UK41 AC116407.2-201ENST00000613639 860 ntBASIC18.2■□□□□ 0.5
VPS28Q9UK41 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC18.2■□□□□ 0.5
VPS28Q9UK41 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS28Q9UK41 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS28Q9UK41 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VPS28Q9UK41 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS28Q9UK41 AC138028.4-201ENST00000564984 1845 ntBASIC18.2■□□□□ 0.5
VPS28Q9UK41 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VPS28Q9UK41 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.2■□□□□ 0.5
VPS28Q9UK41 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS28Q9UK41 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS28Q9UK41 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS28Q9UK41 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS28Q9UK41 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS28Q9UK41 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VPS28Q9UK41 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS28Q9UK41 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS28Q9UK41 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS28Q9UK41 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
VPS28Q9UK41 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC18.2■□□□□ 0.5
VPS28Q9UK41 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VPS28Q9UK41 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VPS28Q9UK41 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
VPS28Q9UK41 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
VPS28Q9UK41 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
VPS28Q9UK41 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.19■□□□□ 0.5
VPS28Q9UK41 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
VPS28Q9UK41 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS28Q9UK41 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS28Q9UK41 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS28Q9UK41 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS28Q9UK41 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS28Q9UK41 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18.19■□□□□ 0.5
VPS28Q9UK41 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VPS28Q9UK41 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS28Q9UK41 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS28Q9UK41 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VPS28Q9UK41 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
VPS28Q9UK41 AC096633.1-201ENST00000422446 749 ntBASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms