Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 AL353692.3-201ENST00000407031 1396 ntBASIC19.32■□□□□ 0.68
LIMA1Q9UHB6 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LIMA1Q9UHB6 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
LIMA1Q9UHB6 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LIMA1Q9UHB6 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC19.32■□□□□ 0.68
LIMA1Q9UHB6 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC19.32■□□□□ 0.68
LIMA1Q9UHB6 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMA1Q9UHB6 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC19.32■□□□□ 0.68
LIMA1Q9UHB6 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC19.32■□□□□ 0.68
LIMA1Q9UHB6 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMA1Q9UHB6 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
LIMA1Q9UHB6 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
LIMA1Q9UHB6 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC19.32■□□□□ 0.68
LIMA1Q9UHB6 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC19.32■□□□□ 0.68
LIMA1Q9UHB6 NAA38-203ENST00000575071 553 ntTSL 2 BASIC19.32■□□□□ 0.68
LIMA1Q9UHB6 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC19.32■□□□□ 0.68
LIMA1Q9UHB6 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LIMA1Q9UHB6 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMA1Q9UHB6 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
LIMA1Q9UHB6 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
LIMA1Q9UHB6 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
LIMA1Q9UHB6 HCG11-201ENST00000411553 5696 ntBASIC19.32■□□□□ 0.68
LIMA1Q9UHB6 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LIMA1Q9UHB6 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC19.32■□□□□ 0.68
LIMA1Q9UHB6 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
LIMA1Q9UHB6 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LIMA1Q9UHB6 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LIMA1Q9UHB6 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LIMA1Q9UHB6 AGGF1P2-201ENST00000426656 2106 ntBASIC19.31■□□□□ 0.68
LIMA1Q9UHB6 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC19.31■□□□□ 0.68
LIMA1Q9UHB6 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMA1Q9UHB6 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LIMA1Q9UHB6 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC19.31■□□□□ 0.68
LIMA1Q9UHB6 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMA1Q9UHB6 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
LIMA1Q9UHB6 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC19.31■□□□□ 0.68
LIMA1Q9UHB6 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMA1Q9UHB6 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMA1Q9UHB6 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
LIMA1Q9UHB6 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
LIMA1Q9UHB6 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMA1Q9UHB6 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMA1Q9UHB6 SLC25A1P3-201ENST00000395415 828 ntBASIC19.31■□□□□ 0.68
LIMA1Q9UHB6 FAM8A6P-201ENST00000407496 1135 ntBASIC19.31■□□□□ 0.68
LIMA1Q9UHB6 AP003733.1-201ENST00000491725 852 ntBASIC19.31■□□□□ 0.68
LIMA1Q9UHB6 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC19.31■□□□□ 0.68
LIMA1Q9UHB6 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC19.31■□□□□ 0.68
LIMA1Q9UHB6 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC19.31■□□□□ 0.68
LIMA1Q9UHB6 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMA1Q9UHB6 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMA1Q9UHB6 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LIMA1Q9UHB6 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMA1Q9UHB6 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMA1Q9UHB6 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
LIMA1Q9UHB6 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC19.31■□□□□ 0.68
LIMA1Q9UHB6 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC19.31■□□□□ 0.68
LIMA1Q9UHB6 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LIMA1Q9UHB6 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LIMA1Q9UHB6 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC19.3■□□□□ 0.68
LIMA1Q9UHB6 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIMA1Q9UHB6 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIMA1Q9UHB6 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
LIMA1Q9UHB6 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIMA1Q9UHB6 LGALS8-AS1-201ENST00000487567 1457 ntBASIC19.3■□□□□ 0.68
LIMA1Q9UHB6 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIMA1Q9UHB6 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
LIMA1Q9UHB6 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIMA1Q9UHB6 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
LIMA1Q9UHB6 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIMA1Q9UHB6 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
LIMA1Q9UHB6 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIMA1Q9UHB6 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC19.3■□□□□ 0.68
LIMA1Q9UHB6 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC19.3■□□□□ 0.68
LIMA1Q9UHB6 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIMA1Q9UHB6 SNX5-210ENST00000481323 562 ntTSL 3 BASIC19.3■□□□□ 0.68
LIMA1Q9UHB6 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC19.3■□□□□ 0.68
LIMA1Q9UHB6 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIMA1Q9UHB6 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LIMA1Q9UHB6 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC19.3■□□□□ 0.68
LIMA1Q9UHB6 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIMA1Q9UHB6 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIMA1Q9UHB6 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC19.3■□□□□ 0.68
LIMA1Q9UHB6 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIMA1Q9UHB6 AL118508.1-201ENST00000613502 2345 ntBASIC19.3■□□□□ 0.68
LIMA1Q9UHB6 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIMA1Q9UHB6 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC19.3■□□□□ 0.68
LIMA1Q9UHB6 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
LIMA1Q9UHB6 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LIMA1Q9UHB6 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC19.3■□□□□ 0.68
LIMA1Q9UHB6 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 ADM-208ENST00000534464 1640 ntTSL 2 BASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
LIMA1Q9UHB6 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms