Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
CNTN3Q9P232 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
CNTN3Q9P232 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
CNTN3Q9P232 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC19.02■□□□□ 0.63
CNTN3Q9P232 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CNTN3Q9P232 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CNTN3Q9P232 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CNTN3Q9P232 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CNTN3Q9P232 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC19.01■□□□□ 0.63
CNTN3Q9P232 AC068880.1-201ENST00000507289 2297 ntBASIC19.01■□□□□ 0.63
CNTN3Q9P232 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.01■□□□□ 0.63
CNTN3Q9P232 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC19.01■□□□□ 0.63
CNTN3Q9P232 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
CNTN3Q9P232 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
CNTN3Q9P232 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC19.01■□□□□ 0.63
CNTN3Q9P232 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
CNTN3Q9P232 RPS2P1-201ENST00000434010 821 ntBASIC19.01■□□□□ 0.63
CNTN3Q9P232 NKTR-203ENST00000442970 646 ntTSL 2 BASIC19.01■□□□□ 0.63
CNTN3Q9P232 PRYP5-201ENST00000451909 266 ntBASIC19.01■□□□□ 0.63
CNTN3Q9P232 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC19.01■□□□□ 0.63
CNTN3Q9P232 BX005266.1-201ENST00000473402 457 ntBASIC19.01■□□□□ 0.63
CNTN3Q9P232 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC19.01■□□□□ 0.63
CNTN3Q9P232 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC19.01■□□□□ 0.63
CNTN3Q9P232 AL049840.3-201ENST00000602669 611 ntBASIC19.01■□□□□ 0.63
CNTN3Q9P232 AL022326.1-202ENST00000641533 845 ntBASIC19.01■□□□□ 0.63
CNTN3Q9P232 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CNTN3Q9P232 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
CNTN3Q9P232 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC19.01■□□□□ 0.63
CNTN3Q9P232 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CNTN3Q9P232 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CNTN3Q9P232 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CNTN3Q9P232 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
CNTN3Q9P232 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CNTN3Q9P232 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
CNTN3Q9P232 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC19■□□□□ 0.63
CNTN3Q9P232 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CNTN3Q9P232 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CNTN3Q9P232 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CNTN3Q9P232 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CNTN3Q9P232 AC003669.1-201ENST00000334569 611 ntBASIC19■□□□□ 0.63
CNTN3Q9P232 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CNTN3Q9P232 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC19■□□□□ 0.63
CNTN3Q9P232 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC19■□□□□ 0.63
CNTN3Q9P232 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC19■□□□□ 0.63
CNTN3Q9P232 AL020989.1-201ENST00000422979 469 ntBASIC19■□□□□ 0.63
CNTN3Q9P232 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CNTN3Q9P232 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
CNTN3Q9P232 SLC25A6P5-201ENST00000435663 894 ntBASIC19■□□□□ 0.63
CNTN3Q9P232 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC19■□□□□ 0.63
CNTN3Q9P232 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CNTN3Q9P232 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC19■□□□□ 0.63
CNTN3Q9P232 STK25P1-201ENST00000585406 838 ntBASIC19■□□□□ 0.63
CNTN3Q9P232 BX640515.1-201ENST00000617215 977 ntBASIC19■□□□□ 0.63
CNTN3Q9P232 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC19■□□□□ 0.63
CNTN3Q9P232 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC19■□□□□ 0.63
CNTN3Q9P232 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CNTN3Q9P232 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CNTN3Q9P232 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CNTN3Q9P232 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC19■□□□□ 0.63
CNTN3Q9P232 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CNTN3Q9P232 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC19■□□□□ 0.63
CNTN3Q9P232 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC19■□□□□ 0.63
CNTN3Q9P232 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CNTN3Q9P232 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CNTN3Q9P232 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CNTN3Q9P232 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.99■□□□□ 0.63
CNTN3Q9P232 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CNTN3Q9P232 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CNTN3Q9P232 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CNTN3Q9P232 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CNTN3Q9P232 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC18.99■□□□□ 0.63
CNTN3Q9P232 AC243591.1-201ENST00000452967 1364 ntBASIC18.99■□□□□ 0.63
CNTN3Q9P232 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CNTN3Q9P232 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
CNTN3Q9P232 RPS2P28-201ENST00000314255 741 ntBASIC18.99■□□□□ 0.63
CNTN3Q9P232 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CNTN3Q9P232 KLF4P1-201ENST00000412782 1185 ntBASIC18.99■□□□□ 0.63
CNTN3Q9P232 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC18.99■□□□□ 0.63
CNTN3Q9P232 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC18.99■□□□□ 0.63
CNTN3Q9P232 OR7E14P-202ENST00000530490 1290 ntBASIC18.99■□□□□ 0.63
CNTN3Q9P232 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC18.99■□□□□ 0.63
CNTN3Q9P232 RNF151-202ENST00000569210 853 ntTSL 2 BASIC18.99■□□□□ 0.63
CNTN3Q9P232 PRKN-208ENST00000610470 531 ntTSL 2 BASIC18.99■□□□□ 0.63
CNTN3Q9P232 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC18.99■□□□□ 0.63
CNTN3Q9P232 PRKN-209ENST00000612485 225 ntTSL 5 BASIC18.99■□□□□ 0.63
CNTN3Q9P232 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC18.99■□□□□ 0.63
CNTN3Q9P232 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC18.99■□□□□ 0.63
CNTN3Q9P232 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
CNTN3Q9P232 AC107918.4-202ENST00000641623 219 ntBASIC18.99■□□□□ 0.63
CNTN3Q9P232 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CNTN3Q9P232 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CNTN3Q9P232 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CNTN3Q9P232 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC18.99■□□□□ 0.63
CNTN3Q9P232 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
CNTN3Q9P232 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.99■□□□□ 0.63
CNTN3Q9P232 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CNTN3Q9P232 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.99■□□□□ 0.63
CNTN3Q9P232 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CNTN3Q9P232 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CNTN3Q9P232 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms