Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
DDX4Q9NQI0 IGLL3P-201ENST00000412472 434 ntBASIC20.78■□□□□ 0.92
DDX4Q9NQI0 LINC00982-205ENST00000420957 435 ntBASIC20.78■□□□□ 0.92
DDX4Q9NQI0 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
DDX4Q9NQI0 VN2R19P-201ENST00000442399 1052 ntBASIC20.78■□□□□ 0.92
DDX4Q9NQI0 DNAJB3-201ENST00000446806 729 ntBASIC20.78■□□□□ 0.92
DDX4Q9NQI0 RIN3-211ENST00000557762 517 ntTSL 3 BASIC20.78■□□□□ 0.92
DDX4Q9NQI0 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC20.78■□□□□ 0.92
DDX4Q9NQI0 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC20.78■□□□□ 0.92
DDX4Q9NQI0 COX5A-206ENST00000568783 571 ntTSL 3 BASIC20.78■□□□□ 0.92
DDX4Q9NQI0 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
DDX4Q9NQI0 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC20.78■□□□□ 0.92
DDX4Q9NQI0 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC20.78■□□□□ 0.92
DDX4Q9NQI0 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
DDX4Q9NQI0 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
DDX4Q9NQI0 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
DDX4Q9NQI0 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
DDX4Q9NQI0 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
DDX4Q9NQI0 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC20.77■□□□□ 0.92
DDX4Q9NQI0 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
DDX4Q9NQI0 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC20.77■□□□□ 0.92
DDX4Q9NQI0 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
DDX4Q9NQI0 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
DDX4Q9NQI0 REXO1L11P-201ENST00000620964 1927 ntBASIC20.77■□□□□ 0.92
DDX4Q9NQI0 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
DDX4Q9NQI0 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
DDX4Q9NQI0 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
DDX4Q9NQI0 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
DDX4Q9NQI0 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
DDX4Q9NQI0 CRYGEP-201ENST00000412192 528 ntBASIC20.77■□□□□ 0.92
DDX4Q9NQI0 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC20.77■□□□□ 0.92
DDX4Q9NQI0 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC20.77■□□□□ 0.92
DDX4Q9NQI0 AP001160.2-201ENST00000596071 487 ntBASIC20.77■□□□□ 0.92
DDX4Q9NQI0 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC20.77■□□□□ 0.92
DDX4Q9NQI0 AL805961.1-202ENST00000641562 540 ntBASIC20.77■□□□□ 0.92
DDX4Q9NQI0 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
DDX4Q9NQI0 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
DDX4Q9NQI0 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.92
DDX4Q9NQI0 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
DDX4Q9NQI0 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
DDX4Q9NQI0 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
DDX4Q9NQI0 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
DDX4Q9NQI0 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
DDX4Q9NQI0 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
DDX4Q9NQI0 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
DDX4Q9NQI0 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
DDX4Q9NQI0 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
DDX4Q9NQI0 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC20.76■□□□□ 0.91
DDX4Q9NQI0 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
DDX4Q9NQI0 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC20.76■□□□□ 0.91
DDX4Q9NQI0 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
DDX4Q9NQI0 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
DDX4Q9NQI0 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC20.76■□□□□ 0.91
DDX4Q9NQI0 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC20.76■□□□□ 0.91
DDX4Q9NQI0 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
DDX4Q9NQI0 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC20.76■□□□□ 0.91
DDX4Q9NQI0 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
DDX4Q9NQI0 HNRNPA1P28-201ENST00000424481 961 ntBASIC20.76■□□□□ 0.91
DDX4Q9NQI0 RPS8P6-201ENST00000426177 609 ntBASIC20.76■□□□□ 0.91
DDX4Q9NQI0 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC20.76■□□□□ 0.91
DDX4Q9NQI0 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC20.76■□□□□ 0.91
DDX4Q9NQI0 AL513190.1-201ENST00000621254 727 ntBASIC20.76■□□□□ 0.91
DDX4Q9NQI0 AC134684.3-201ENST00000641758 218 ntBASIC20.76■□□□□ 0.91
DDX4Q9NQI0 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
DDX4Q9NQI0 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
DDX4Q9NQI0 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
DDX4Q9NQI0 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
DDX4Q9NQI0 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
DDX4Q9NQI0 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
DDX4Q9NQI0 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC20.76■□□□□ 0.91
DDX4Q9NQI0 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
DDX4Q9NQI0 GPR89P-201ENST00000407924 1495 ntBASIC20.75■□□□□ 0.91
DDX4Q9NQI0 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
DDX4Q9NQI0 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
DDX4Q9NQI0 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC20.75■□□□□ 0.91
DDX4Q9NQI0 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
DDX4Q9NQI0 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC20.75■□□□□ 0.91
DDX4Q9NQI0 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC20.75■□□□□ 0.91
DDX4Q9NQI0 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC20.75■□□□□ 0.91
DDX4Q9NQI0 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC20.75■□□□□ 0.91
DDX4Q9NQI0 OR7E47P-204ENST00000575924 449 ntBASIC20.75■□□□□ 0.91
DDX4Q9NQI0 MIR3687-2-201ENST00000577708 61 ntBASIC20.75■□□□□ 0.91
DDX4Q9NQI0 MIR3687-1-201ENST00000614492 61 ntBASIC20.75■□□□□ 0.91
DDX4Q9NQI0 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
DDX4Q9NQI0 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
DDX4Q9NQI0 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
DDX4Q9NQI0 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
DDX4Q9NQI0 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
DDX4Q9NQI0 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC20.75■□□□□ 0.91
DDX4Q9NQI0 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
DDX4Q9NQI0 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC20.74■□□□□ 0.91
DDX4Q9NQI0 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC20.74■□□□□ 0.91
DDX4Q9NQI0 PXK-206ENST00000463280 2825 ntTSL 2 BASIC20.74■□□□□ 0.91
DDX4Q9NQI0 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
DDX4Q9NQI0 AC138028.4-201ENST00000564984 1845 ntBASIC20.74■□□□□ 0.91
DDX4Q9NQI0 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
DDX4Q9NQI0 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
DDX4Q9NQI0 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
DDX4Q9NQI0 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
DDX4Q9NQI0 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms