Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL12A1Q99715 AC068587.10-201ENST00000641210 219 ntBASIC15.32■□□□□ 0.04
COL12A1Q99715 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL12A1Q99715 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC15.32■□□□□ 0.04
COL12A1Q99715 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL12A1Q99715 AC138969.3-201ENST00000546612 1459 ntBASIC15.32■□□□□ 0.04
COL12A1Q99715 AC138932.2-201ENST00000548268 1459 ntBASIC15.32■□□□□ 0.04
COL12A1Q99715 AC126755.4-201ENST00000549796 1459 ntBASIC15.32■□□□□ 0.04
COL12A1Q99715 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC15.32■□□□□ 0.04
COL12A1Q99715 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC15.32■□□□□ 0.04
COL12A1Q99715 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL12A1Q99715 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL12A1Q99715 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC15.32■□□□□ 0.04
COL12A1Q99715 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL12A1Q99715 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
COL12A1Q99715 PXK-206ENST00000463280 2825 ntTSL 2 BASIC15.32■□□□□ 0.04
COL12A1Q99715 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
COL12A1Q99715 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL12A1Q99715 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC15.32■□□□□ 0.04
COL12A1Q99715 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC15.32■□□□□ 0.04
COL12A1Q99715 AC099568.2-201ENST00000609194 695 ntBASIC15.32■□□□□ 0.04
COL12A1Q99715 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC15.32■□□□□ 0.04
COL12A1Q99715 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC15.32■□□□□ 0.04
COL12A1Q99715 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL12A1Q99715 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL12A1Q99715 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL12A1Q99715 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL12A1Q99715 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL12A1Q99715 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC15.32■□□□□ 0.04
COL12A1Q99715 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL12A1Q99715 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL12A1Q99715 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL12A1Q99715 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL12A1Q99715 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL12A1Q99715 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC15.32■□□□□ 0.04
COL12A1Q99715 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC15.32■□□□□ 0.04
COL12A1Q99715 RPS15P9-201ENST00000494093 319 ntBASIC15.32■□□□□ 0.04
COL12A1Q99715 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
COL12A1Q99715 AC243562.1-201ENST00000560672 389 ntBASIC15.32■□□□□ 0.04
COL12A1Q99715 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC15.32■□□□□ 0.04
COL12A1Q99715 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
COL12A1Q99715 AC018445.3-201ENST00000624177 1945 ntBASIC15.32■□□□□ 0.04
COL12A1Q99715 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC15.32■□□□□ 0.04
COL12A1Q99715 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
COL12A1Q99715 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC15.31■□□□□ 0.04
COL12A1Q99715 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL12A1Q99715 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL12A1Q99715 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
COL12A1Q99715 AC006116.8-202ENST00000587620 1550 ntBASIC15.31■□□□□ 0.04
COL12A1Q99715 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL12A1Q99715 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC15.31■□□□□ 0.04
COL12A1Q99715 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC15.31■□□□□ 0.04
COL12A1Q99715 FAM8A2P-201ENST00000528813 1142 ntBASIC15.31■□□□□ 0.04
COL12A1Q99715 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC15.31■□□□□ 0.04
COL12A1Q99715 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL12A1Q99715 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL12A1Q99715 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC15.31■□□□□ 0.04
COL12A1Q99715 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL12A1Q99715 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC15.31■□□□□ 0.04
COL12A1Q99715 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC15.31■□□□□ 0.04
COL12A1Q99715 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL12A1Q99715 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC15.31■□□□□ 0.04
COL12A1Q99715 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC15.31■□□□□ 0.04
COL12A1Q99715 PACS1-203ENST00000524815 628 ntTSL 4 BASIC15.31■□□□□ 0.04
COL12A1Q99715 TSFM-210ENST00000550559 897 ntTSL 5 BASIC15.31■□□□□ 0.04
COL12A1Q99715 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL12A1Q99715 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL12A1Q99715 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
COL12A1Q99715 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
COL12A1Q99715 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL12A1Q99715 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL12A1Q99715 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL12A1Q99715 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL12A1Q99715 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL12A1Q99715 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL12A1Q99715 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL12A1Q99715 DGCR5-201ENST00000399539 862 ntBASIC15.3■□□□□ 0.04
COL12A1Q99715 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC15.3■□□□□ 0.04
COL12A1Q99715 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC15.3■□□□□ 0.04
COL12A1Q99715 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL12A1Q99715 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL12A1Q99715 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC15.3■□□□□ 0.04
COL12A1Q99715 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL12A1Q99715 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
COL12A1Q99715 AC022144.1-201ENST00000602255 1580 ntBASIC15.3■□□□□ 0.04
COL12A1Q99715 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL12A1Q99715 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL12A1Q99715 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC15.3■□□□□ 0.04
COL12A1Q99715 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC15.3■□□□□ 0.04
COL12A1Q99715 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL12A1Q99715 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL12A1Q99715 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL12A1Q99715 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL12A1Q99715 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC15.3■□□□□ 0.04
COL12A1Q99715 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
COL12A1Q99715 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC15.3■□□□□ 0.04
COL12A1Q99715 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC15.3■□□□□ 0.04
COL12A1Q99715 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
COL12A1Q99715 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL12A1Q99715 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms