Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.71■□□□□ 0.27
PTCHD1Q96NR3 MIR5100-201ENST00000579544 119 ntBASIC16.71■□□□□ 0.27
PTCHD1Q96NR3 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
PTCHD1Q96NR3 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTCHD1Q96NR3 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTCHD1Q96NR3 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC16.71■□□□□ 0.27
PTCHD1Q96NR3 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTCHD1Q96NR3 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTCHD1Q96NR3 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PTCHD1Q96NR3 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
PTCHD1Q96NR3 AC008764.6-201ENST00000595909 2069 ntBASIC16.71■□□□□ 0.27
PTCHD1Q96NR3 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.71■□□□□ 0.27
PTCHD1Q96NR3 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
PTCHD1Q96NR3 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
PTCHD1Q96NR3 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.71■□□□□ 0.27
PTCHD1Q96NR3 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
PTCHD1Q96NR3 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 KRT18P55-202ENST00000578578 1546 ntBASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 MED29-202ENST00000594368 1471 ntTSL 2 BASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 AC096633.1-201ENST00000422446 749 ntBASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 AC111152.3-201ENST00000569699 673 ntBASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 TBCB-205ENST00000585746 875 ntTSL 3 BASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 AL591684.3-201ENST00000605187 298 ntBASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 AC114341.1-201ENST00000618070 349 ntBASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PTCHD1Q96NR3 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 PCDHB18P-201ENST00000524813 2368 ntBASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PTCHD1Q96NR3 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
PTCHD1Q96NR3 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD1Q96NR3 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD1Q96NR3 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD1Q96NR3 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PTCHD1Q96NR3 AC009949.1-201ENST00000623048 1830 ntBASIC16.68■□□□□ 0.26
PTCHD1Q96NR3 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms