Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VMP1Q96GC9 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VMP1Q96GC9 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VMP1Q96GC9 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VMP1Q96GC9 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC16.99■□□□□ 0.31
VMP1Q96GC9 BX276092.5-203ENST00000456199 560 ntBASIC16.99■□□□□ 0.31
VMP1Q96GC9 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC16.99■□□□□ 0.31
VMP1Q96GC9 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC16.99■□□□□ 0.31
VMP1Q96GC9 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC16.99■□□□□ 0.31
VMP1Q96GC9 TK1-205ENST00000590862 642 ntTSL 3 BASIC16.99■□□□□ 0.31
VMP1Q96GC9 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
VMP1Q96GC9 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VMP1Q96GC9 AL121672.3-201ENST00000608644 468 ntBASIC16.99■□□□□ 0.31
VMP1Q96GC9 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VMP1Q96GC9 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VMP1Q96GC9 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VMP1Q96GC9 GNE-204ENST00000539208 2190 ntTSL 2 BASIC16.99■□□□□ 0.31
VMP1Q96GC9 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
VMP1Q96GC9 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VMP1Q96GC9 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
VMP1Q96GC9 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VMP1Q96GC9 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
VMP1Q96GC9 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
VMP1Q96GC9 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VMP1Q96GC9 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VMP1Q96GC9 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
VMP1Q96GC9 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
VMP1Q96GC9 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
VMP1Q96GC9 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC16.98■□□□□ 0.31
VMP1Q96GC9 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VMP1Q96GC9 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VMP1Q96GC9 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VMP1Q96GC9 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
VMP1Q96GC9 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VMP1Q96GC9 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VMP1Q96GC9 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
VMP1Q96GC9 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC16.98■□□□□ 0.31
VMP1Q96GC9 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VMP1Q96GC9 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VMP1Q96GC9 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
VMP1Q96GC9 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VMP1Q96GC9 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC16.98■□□□□ 0.31
VMP1Q96GC9 KRT8P26-201ENST00000534154 1276 ntBASIC16.98■□□□□ 0.31
VMP1Q96GC9 PPOX-214ENST00000535223 664 ntTSL 3 BASIC16.98■□□□□ 0.31
VMP1Q96GC9 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VMP1Q96GC9 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC16.98■□□□□ 0.31
VMP1Q96GC9 GPR32P1-201ENST00000601788 811 ntBASIC16.98■□□□□ 0.31
VMP1Q96GC9 AC093458.2-201ENST00000623150 629 ntBASIC16.98■□□□□ 0.31
VMP1Q96GC9 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VMP1Q96GC9 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VMP1Q96GC9 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VMP1Q96GC9 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VMP1Q96GC9 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
VMP1Q96GC9 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC16.98■□□□□ 0.31
VMP1Q96GC9 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC16.98■□□□□ 0.31
VMP1Q96GC9 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
VMP1Q96GC9 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VMP1Q96GC9 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC16.98■□□□□ 0.31
VMP1Q96GC9 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VMP1Q96GC9 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
VMP1Q96GC9 AD000864.1-201ENST00000624076 2295 ntBASIC16.98■□□□□ 0.31
VMP1Q96GC9 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VMP1Q96GC9 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VMP1Q96GC9 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.97■□□□□ 0.31
VMP1Q96GC9 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.97■□□□□ 0.31
VMP1Q96GC9 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
VMP1Q96GC9 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
VMP1Q96GC9 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC16.97■□□□□ 0.31
VMP1Q96GC9 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
VMP1Q96GC9 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VMP1Q96GC9 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
VMP1Q96GC9 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC16.97■□□□□ 0.31
VMP1Q96GC9 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
VMP1Q96GC9 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VMP1Q96GC9 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VMP1Q96GC9 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
VMP1Q96GC9 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VMP1Q96GC9 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC16.97■□□□□ 0.31
VMP1Q96GC9 IGHGP-201ENST00000390555 1178 ntBASIC16.97■□□□□ 0.31
VMP1Q96GC9 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VMP1Q96GC9 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VMP1Q96GC9 TSPY22P-201ENST00000427496 604 ntBASIC16.97■□□□□ 0.31
VMP1Q96GC9 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC16.97■□□□□ 0.31
VMP1Q96GC9 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VMP1Q96GC9 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC16.97■□□□□ 0.31
VMP1Q96GC9 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC16.97■□□□□ 0.31
VMP1Q96GC9 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC16.97■□□□□ 0.31
VMP1Q96GC9 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC16.97■□□□□ 0.31
VMP1Q96GC9 RNF126P1-202ENST00000569893 925 ntBASIC16.97■□□□□ 0.31
VMP1Q96GC9 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
VMP1Q96GC9 AC005332.3-201ENST00000589904 676 ntBASIC16.97■□□□□ 0.31
VMP1Q96GC9 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
VMP1Q96GC9 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC16.97■□□□□ 0.31
VMP1Q96GC9 OR6D1P-203ENST00000641209 4860 ntBASIC16.97■□□□□ 0.31
VMP1Q96GC9 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VMP1Q96GC9 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC16.97■□□□□ 0.31
VMP1Q96GC9 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
VMP1Q96GC9 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
VMP1Q96GC9 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VMP1Q96GC9 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms