Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 PTPA-216ENST00000432651 857 ntTSL 2 BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 C2orf69P3-201ENST00000565542 1120 ntBASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
ZNF540Q8NDQ6 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 AC106886.4-201ENST00000623557 2502 ntBASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 CICP6-201ENST00000457191 2729 ntBASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
ZNF540Q8NDQ6 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 DERL1-203ENST00000419562 918 ntTSL 2 BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 AL590326.2-201ENST00000625139 305 ntBASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 CLN6-221ENST00000637494 765 ntTSL 5 BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
ZNF540Q8NDQ6 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms