Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 AL513210.1-201ENST00000629608 234 ntBASIC18.03■□□□□ 0.48
SLC44A3Q8N4M1 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.03■□□□□ 0.48
SLC44A3Q8N4M1 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.03■□□□□ 0.48
SLC44A3Q8N4M1 AC018445.3-201ENST00000624177 1945 ntBASIC18.03■□□□□ 0.48
SLC44A3Q8N4M1 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SLC44A3Q8N4M1 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SLC44A3Q8N4M1 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SLC44A3Q8N4M1 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SLC44A3Q8N4M1 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SLC44A3Q8N4M1 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SLC44A3Q8N4M1 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.03■□□□□ 0.48
SLC44A3Q8N4M1 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC18.03■□□□□ 0.48
SLC44A3Q8N4M1 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SLC44A3Q8N4M1 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
SLC44A3Q8N4M1 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC18.02■□□□□ 0.48
SLC44A3Q8N4M1 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
SLC44A3Q8N4M1 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SLC44A3Q8N4M1 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC18.02■□□□□ 0.48
SLC44A3Q8N4M1 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.48
SLC44A3Q8N4M1 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.02■□□□□ 0.48
SLC44A3Q8N4M1 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.02■□□□□ 0.48
SLC44A3Q8N4M1 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
SLC44A3Q8N4M1 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
SLC44A3Q8N4M1 CD99-202ENST00000381180 530 ntTSL 2 BASIC18.02■□□□□ 0.48
SLC44A3Q8N4M1 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC18.02■□□□□ 0.48
SLC44A3Q8N4M1 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC18.02■□□□□ 0.48
SLC44A3Q8N4M1 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
SLC44A3Q8N4M1 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC18.02■□□□□ 0.48
SLC44A3Q8N4M1 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC18.02■□□□□ 0.48
SLC44A3Q8N4M1 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC18.02■□□□□ 0.48
SLC44A3Q8N4M1 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC18.02■□□□□ 0.48
SLC44A3Q8N4M1 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC18.02■□□□□ 0.48
SLC44A3Q8N4M1 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
SLC44A3Q8N4M1 AC019129.2-201ENST00000609837 1235 ntBASIC18.02■□□□□ 0.48
SLC44A3Q8N4M1 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SLC44A3Q8N4M1 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.48
SLC44A3Q8N4M1 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.02■□□□□ 0.47
SLC44A3Q8N4M1 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SLC44A3Q8N4M1 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
SLC44A3Q8N4M1 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
SLC44A3Q8N4M1 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
SLC44A3Q8N4M1 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
SLC44A3Q8N4M1 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
SLC44A3Q8N4M1 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
SLC44A3Q8N4M1 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.02■□□□□ 0.47
SLC44A3Q8N4M1 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
SLC44A3Q8N4M1 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 REM2-202ENST00000536884 1331 ntTSL 2 BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 AC097637.2-201ENST00000624096 1997 ntBASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 AC004461.1-201ENST00000412461 403 ntBASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 HLA-J-203ENST00000494367 1087 ntBASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 AC109462.3-201ENST00000573934 613 ntBASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 AC105339.1-204ENST00000636249 355 ntBASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 AC092902.6-201ENST00000641783 218 ntBASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 GOLGA6L17P-202ENST00000614358 1398 ntBASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SLC44A3Q8N4M1 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
SLC44A3Q8N4M1 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SLC44A3Q8N4M1 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
SLC44A3Q8N4M1 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18■□□□□ 0.47
SLC44A3Q8N4M1 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18■□□□□ 0.47
SLC44A3Q8N4M1 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
SLC44A3Q8N4M1 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC18■□□□□ 0.47
SLC44A3Q8N4M1 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC18■□□□□ 0.47
SLC44A3Q8N4M1 PTMS-202ENST00000389462 773 ntTSL 2 BASIC18■□□□□ 0.47
SLC44A3Q8N4M1 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC18■□□□□ 0.47
SLC44A3Q8N4M1 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC18■□□□□ 0.47
SLC44A3Q8N4M1 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms