Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
LIM2P55344 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.81■□□□□ 0.28
LIM2P55344 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIM2P55344 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIM2P55344 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIM2P55344 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LIM2P55344 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIM2P55344 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LIM2P55344 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC16.8■□□□□ 0.28
LIM2P55344 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LIM2P55344 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
LIM2P55344 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LIM2P55344 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIM2P55344 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC16.8■□□□□ 0.28
LIM2P55344 IGHV3-47-201ENST00000425060 335 ntBASIC16.8■□□□□ 0.28
LIM2P55344 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIM2P55344 HCG4P8-203ENST00000443049 980 ntBASIC16.8■□□□□ 0.28
LIM2P55344 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC16.8■□□□□ 0.28
LIM2P55344 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC16.8■□□□□ 0.28
LIM2P55344 AC074051.2-201ENST00000565115 352 ntBASIC16.8■□□□□ 0.28
LIM2P55344 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC16.8■□□□□ 0.28
LIM2P55344 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC16.8■□□□□ 0.28
LIM2P55344 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC16.8■□□□□ 0.28
LIM2P55344 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LIM2P55344 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC16.8■□□□□ 0.28
LIM2P55344 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
LIM2P55344 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
LIM2P55344 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
LIM2P55344 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIM2P55344 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIM2P55344 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIM2P55344 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIM2P55344 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC16.8■□□□□ 0.28
LIM2P55344 NSUN5P1-202ENST00000421140 1535 ntBASIC16.8■□□□□ 0.28
LIM2P55344 NSUN5P2-203ENST00000457352 1529 ntBASIC16.8■□□□□ 0.28
LIM2P55344 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LIM2P55344 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
LIM2P55344 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC16.8■□□□□ 0.28
LIM2P55344 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LIM2P55344 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIM2P55344 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC16.79■□□□□ 0.28
LIM2P55344 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC16.79■□□□□ 0.28
LIM2P55344 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC16.79■□□□□ 0.28
LIM2P55344 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIM2P55344 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LIM2P55344 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC16.79■□□□□ 0.28
LIM2P55344 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.79■□□□□ 0.28
LIM2P55344 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIM2P55344 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC16.79■□□□□ 0.28
LIM2P55344 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.79■□□□□ 0.28
LIM2P55344 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.79■□□□□ 0.28
LIM2P55344 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC16.79■□□□□ 0.28
LIM2P55344 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIM2P55344 MEG3-211ENST00000452514 461 ntTSL 3 BASIC16.79■□□□□ 0.28
LIM2P55344 MINOS1P3-201ENST00000457048 203 ntBASIC16.79■□□□□ 0.28
LIM2P55344 AC104819.1-201ENST00000504587 486 ntBASIC16.79■□□□□ 0.28
LIM2P55344 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.79■□□□□ 0.28
LIM2P55344 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
LIM2P55344 AC012615.1-201ENST00000565797 1299 ntBASIC16.79■□□□□ 0.28
LIM2P55344 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC16.79■□□□□ 0.28
LIM2P55344 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.79■□□□□ 0.28
LIM2P55344 AC010460.3-201ENST00000511359 1579 ntBASIC16.79■□□□□ 0.28
LIM2P55344 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC16.79■□□□□ 0.28
LIM2P55344 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LIM2P55344 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
LIM2P55344 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.79■□□□□ 0.28
LIM2P55344 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIM2P55344 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LIM2P55344 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LIM2P55344 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
LIM2P55344 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIM2P55344 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.79■□□□□ 0.28
LIM2P55344 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LIM2P55344 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIM2P55344 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LIM2P55344 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
LIM2P55344 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.79■□□□□ 0.28
LIM2P55344 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIM2P55344 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIM2P55344 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIM2P55344 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
LIM2P55344 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIM2P55344 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC16.78■□□□□ 0.28
LIM2P55344 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIM2P55344 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
LIM2P55344 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIM2P55344 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
LIM2P55344 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC16.78■□□□□ 0.28
LIM2P55344 AC007967.3-201ENST00000434308 558 ntBASIC16.78■□□□□ 0.28
LIM2P55344 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LIM2P55344 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
LIM2P55344 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.78■□□□□ 0.28
LIM2P55344 AC009533.2-201ENST00000543664 586 ntBASIC16.78■□□□□ 0.28
LIM2P55344 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC16.78■□□□□ 0.28
LIM2P55344 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.78■□□□□ 0.28
LIM2P55344 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LIM2P55344 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LIM2P55344 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LIM2P55344 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
LIM2P55344 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms