Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC13.33□□□□□ -0.28
FOXA3P55318 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC13.33□□□□□ -0.28
FOXA3P55318 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA3P55318 AC004980.1-204ENST00000429707 299 ntBASIC13.33□□□□□ -0.28
FOXA3P55318 AC083906.2-201ENST00000511578 360 ntBASIC13.33□□□□□ -0.28
FOXA3P55318 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC13.33□□□□□ -0.28
FOXA3P55318 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA3P55318 LINC01451-201ENST00000623792 534 ntBASIC13.33□□□□□ -0.28
FOXA3P55318 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA3P55318 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA3P55318 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA3P55318 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA3P55318 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC13.33□□□□□ -0.28
FOXA3P55318 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA3P55318 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
FOXA3P55318 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC13.33□□□□□ -0.28
FOXA3P55318 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA3P55318 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC13.33□□□□□ -0.28
FOXA3P55318 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA3P55318 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA3P55318 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA3P55318 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC13.33□□□□□ -0.28
FOXA3P55318 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA3P55318 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
FOXA3P55318 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
FOXA3P55318 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA3P55318 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA3P55318 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
FOXA3P55318 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
FOXA3P55318 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC13.32□□□□□ -0.28
FOXA3P55318 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA3P55318 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA3P55318 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC13.32□□□□□ -0.28
FOXA3P55318 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA3P55318 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA3P55318 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC13.32□□□□□ -0.28
FOXA3P55318 AL513477.1-201ENST00000602865 2407 ntBASIC13.32□□□□□ -0.28
FOXA3P55318 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
FOXA3P55318 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA3P55318 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA3P55318 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
FOXA3P55318 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA3P55318 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA3P55318 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA3P55318 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA3P55318 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC13.32□□□□□ -0.28
FOXA3P55318 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA3P55318 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA3P55318 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA3P55318 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA3P55318 POM121L13P-201ENST00000422362 380 ntBASIC13.32□□□□□ -0.28
FOXA3P55318 PPP1R14BP2-201ENST00000426284 444 ntBASIC13.32□□□□□ -0.28
FOXA3P55318 ELP6-205ENST00000439305 880 ntTSL 2 BASIC13.32□□□□□ -0.28
FOXA3P55318 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA3P55318 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC13.32□□□□□ -0.28
FOXA3P55318 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA3P55318 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC13.32□□□□□ -0.28
FOXA3P55318 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA3P55318 AC022517.1-201ENST00000592429 346 ntBASIC13.32□□□□□ -0.28
FOXA3P55318 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA3P55318 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA3P55318 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA3P55318 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA3P55318 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC13.32□□□□□ -0.28
FOXA3P55318 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA3P55318 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA3P55318 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA3P55318 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA3P55318 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA3P55318 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC13.32□□□□□ -0.28
FOXA3P55318 AC068587.6-202ENST00000641839 5619 ntBASIC13.32□□□□□ -0.28
FOXA3P55318 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
FOXA3P55318 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC13.32□□□□□ -0.28
FOXA3P55318 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
FOXA3P55318 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC13.32□□□□□ -0.28
FOXA3P55318 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC13.32□□□□□ -0.28
FOXA3P55318 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC13.32□□□□□ -0.28
FOXA3P55318 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC13.31□□□□□ -0.28
FOXA3P55318 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA3P55318 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA3P55318 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC13.31□□□□□ -0.28
FOXA3P55318 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA3P55318 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC13.31□□□□□ -0.28
FOXA3P55318 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC13.31□□□□□ -0.28
FOXA3P55318 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA3P55318 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC13.31□□□□□ -0.28
FOXA3P55318 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC13.31□□□□□ -0.28
FOXA3P55318 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC13.31□□□□□ -0.28
FOXA3P55318 ANKRD26P3-201ENST00000454044 2748 ntBASIC13.31□□□□□ -0.28
FOXA3P55318 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA3P55318 AC132872.4-202ENST00000622924 2756 ntBASIC13.31□□□□□ -0.28
FOXA3P55318 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
FOXA3P55318 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA3P55318 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC13.31□□□□□ -0.28
FOXA3P55318 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC13.31□□□□□ -0.28
FOXA3P55318 CROCCP5-201ENST00000436658 830 ntBASIC13.31□□□□□ -0.28
FOXA3P55318 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC13.31□□□□□ -0.28
FOXA3P55318 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
FOXA3P55318 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC13.31□□□□□ -0.28
FOXA3P55318 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms