Protein–RNA interactions for Protein: P39059

COL15A1, Collagen alpha-1(XV) chain, humanhuman

Predictions only

Length 1,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL15A1P39059 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC22.3■■□□□ 1.16
COL15A1P39059 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL15A1P39059 FLJ13224-201ENST00000313737 1514 ntBASIC22.3■■□□□ 1.16
COL15A1P39059 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL15A1P39059 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC22.3■■□□□ 1.16
COL15A1P39059 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL15A1P39059 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
COL15A1P39059 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC22.3■■□□□ 1.16
COL15A1P39059 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC22.3■■□□□ 1.16
COL15A1P39059 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL15A1P39059 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC22.3■■□□□ 1.16
COL15A1P39059 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL15A1P39059 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL15A1P39059 MRPL20P1-201ENST00000400819 433 ntBASIC22.3■■□□□ 1.16
COL15A1P39059 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
COL15A1P39059 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC22.3■■□□□ 1.16
COL15A1P39059 POLD4-207ENST00000531239 584 ntTSL 2 BASIC22.3■■□□□ 1.16
COL15A1P39059 CD63-210ENST00000550776 870 ntTSL 5 BASIC22.3■■□□□ 1.16
COL15A1P39059 AC109462.3-201ENST00000573934 613 ntBASIC22.3■■□□□ 1.16
COL15A1P39059 STK25P1-201ENST00000585406 838 ntBASIC22.3■■□□□ 1.16
COL15A1P39059 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
COL15A1P39059 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
COL15A1P39059 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC22.3■■□□□ 1.16
COL15A1P39059 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC22.3■■□□□ 1.16
COL15A1P39059 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
COL15A1P39059 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
COL15A1P39059 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL15A1P39059 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL15A1P39059 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC22.3■■□□□ 1.16
COL15A1P39059 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC22.3■■□□□ 1.16
COL15A1P39059 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC22.3■■□□□ 1.16
COL15A1P39059 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC22.3■■□□□ 1.16
COL15A1P39059 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL15A1P39059 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL15A1P39059 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
COL15A1P39059 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
COL15A1P39059 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
COL15A1P39059 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
COL15A1P39059 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL15A1P39059 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL15A1P39059 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL15A1P39059 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC22.29■■□□□ 1.16
COL15A1P39059 PC-208ENST00000529047 1607 ntTSL 3 BASIC22.29■■□□□ 1.16
COL15A1P39059 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
COL15A1P39059 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL15A1P39059 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
COL15A1P39059 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC22.29■■□□□ 1.16
COL15A1P39059 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC22.29■■□□□ 1.16
COL15A1P39059 PUS1-205ENST00000535067 838 ntTSL 3 BASIC22.29■■□□□ 1.16
COL15A1P39059 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC22.29■■□□□ 1.16
COL15A1P39059 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC22.29■■□□□ 1.16
COL15A1P39059 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC22.29■■□□□ 1.16
COL15A1P39059 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL15A1P39059 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
COL15A1P39059 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC22.29■■□□□ 1.16
COL15A1P39059 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL15A1P39059 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL15A1P39059 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
COL15A1P39059 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL15A1P39059 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC22.29■■□□□ 1.16
COL15A1P39059 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
COL15A1P39059 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC22.29■■□□□ 1.16
COL15A1P39059 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL15A1P39059 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL15A1P39059 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL15A1P39059 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL15A1P39059 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL15A1P39059 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL15A1P39059 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC22.28■■□□□ 1.16
COL15A1P39059 CEND1P1-201ENST00000451006 455 ntBASIC22.28■■□□□ 1.16
COL15A1P39059 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC22.28■■□□□ 1.16
COL15A1P39059 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL15A1P39059 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL15A1P39059 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
COL15A1P39059 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL15A1P39059 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC22.28■■□□□ 1.16
COL15A1P39059 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC22.28■■□□□ 1.16
COL15A1P39059 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC22.28■■□□□ 1.16
COL15A1P39059 AC100803.2-201ENST00000562459 1963 ntBASIC22.28■■□□□ 1.16
COL15A1P39059 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
COL15A1P39059 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL15A1P39059 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
COL15A1P39059 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL15A1P39059 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
COL15A1P39059 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC22.28■■□□□ 1.16
COL15A1P39059 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL15A1P39059 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL15A1P39059 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
COL15A1P39059 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
COL15A1P39059 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
COL15A1P39059 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
COL15A1P39059 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC22.27■■□□□ 1.16
COL15A1P39059 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
COL15A1P39059 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC22.27■■□□□ 1.16
COL15A1P39059 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
COL15A1P39059 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC22.27■■□□□ 1.16
COL15A1P39059 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
COL15A1P39059 AL031432.2-201ENST00000566714 459 ntBASIC22.27■■□□□ 1.16
COL15A1P39059 AL928711.1-201ENST00000570165 459 ntBASIC22.27■■□□□ 1.16
COL15A1P39059 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC22.27■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms