Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
RORAP35398 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RORAP35398 AC010460.3-201ENST00000511359 1579 ntBASIC16.81■□□□□ 0.28
RORAP35398 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
RORAP35398 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC16.81■□□□□ 0.28
RORAP35398 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC16.81■□□□□ 0.28
RORAP35398 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
RORAP35398 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RORAP35398 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RORAP35398 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RORAP35398 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
RORAP35398 AC243591.1-201ENST00000452967 1364 ntBASIC16.81■□□□□ 0.28
RORAP35398 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
RORAP35398 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RORAP35398 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RORAP35398 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
RORAP35398 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RORAP35398 AL356309.3-201ENST00000624132 1934 ntBASIC16.81■□□□□ 0.28
RORAP35398 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
RORAP35398 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RORAP35398 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RORAP35398 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.81■□□□□ 0.28
RORAP35398 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RORAP35398 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC16.81■□□□□ 0.28
RORAP35398 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC16.81■□□□□ 0.28
RORAP35398 AC021087.4-201ENST00000563761 564 ntBASIC16.81■□□□□ 0.28
RORAP35398 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.81■□□□□ 0.28
RORAP35398 AL049840.3-201ENST00000602669 611 ntBASIC16.81■□□□□ 0.28
RORAP35398 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RORAP35398 NME4-212ENST00000621774 904 ntTSL 3 BASIC16.81■□□□□ 0.28
RORAP35398 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.81■□□□□ 0.28
RORAP35398 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
RORAP35398 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RORAP35398 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RORAP35398 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
RORAP35398 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
RORAP35398 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
RORAP35398 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
RORAP35398 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC16.81■□□□□ 0.28
RORAP35398 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RORAP35398 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
RORAP35398 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RORAP35398 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RORAP35398 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
RORAP35398 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
RORAP35398 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
RORAP35398 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.8■□□□□ 0.28
RORAP35398 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC16.8■□□□□ 0.28
RORAP35398 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
RORAP35398 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RORAP35398 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RORAP35398 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RORAP35398 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RORAP35398 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC16.8■□□□□ 0.28
RORAP35398 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RORAP35398 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RORAP35398 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RORAP35398 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
RORAP35398 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RORAP35398 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RORAP35398 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
RORAP35398 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
RORAP35398 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
RORAP35398 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RORAP35398 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.8■□□□□ 0.28
RORAP35398 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
RORAP35398 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC16.8■□□□□ 0.28
RORAP35398 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.8■□□□□ 0.28
RORAP35398 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RORAP35398 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
RORAP35398 AC122714.2-201ENST00000502787 707 ntBASIC16.8■□□□□ 0.28
RORAP35398 AC093909.1-201ENST00000504731 1122 ntBASIC16.8■□□□□ 0.28
RORAP35398 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RORAP35398 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.8■□□□□ 0.28
RORAP35398 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
RORAP35398 AL671883.3-201ENST00000603274 991 ntBASIC16.8■□□□□ 0.28
RORAP35398 REXO1L9P-201ENST00000604264 2108 ntBASIC16.8■□□□□ 0.28
RORAP35398 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC16.8■□□□□ 0.28
RORAP35398 AL139288.1-201ENST00000623748 933 ntBASIC16.8■□□□□ 0.28
RORAP35398 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
RORAP35398 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
RORAP35398 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC16.8■□□□□ 0.28
RORAP35398 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RORAP35398 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RORAP35398 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RORAP35398 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RORAP35398 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RORAP35398 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
RORAP35398 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
RORAP35398 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RORAP35398 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
RORAP35398 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
RORAP35398 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
RORAP35398 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC16.79■□□□□ 0.28
RORAP35398 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RORAP35398 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
RORAP35398 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC16.79■□□□□ 0.28
RORAP35398 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC16.79■□□□□ 0.28
RORAP35398 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
RORAP35398 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms