Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL5A1P20908 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC16.84■□□□□ 0.29
COL5A1P20908 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL5A1P20908 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC16.84■□□□□ 0.29
COL5A1P20908 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL5A1P20908 AC004461.1-201ENST00000412461 403 ntBASIC16.84■□□□□ 0.29
COL5A1P20908 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC16.84■□□□□ 0.29
COL5A1P20908 HLA-J-203ENST00000494367 1087 ntBASIC16.84■□□□□ 0.29
COL5A1P20908 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
COL5A1P20908 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC16.84■□□□□ 0.29
COL5A1P20908 AC239800.4-201ENST00000603712 296 ntBASIC16.84■□□□□ 0.29
COL5A1P20908 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL5A1P20908 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
COL5A1P20908 AC009093.7-201ENST00000623853 1223 ntBASIC16.84■□□□□ 0.29
COL5A1P20908 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC16.84■□□□□ 0.29
COL5A1P20908 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL5A1P20908 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL5A1P20908 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL5A1P20908 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL5A1P20908 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC16.84■□□□□ 0.29
COL5A1P20908 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL5A1P20908 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL5A1P20908 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC16.84■□□□□ 0.29
COL5A1P20908 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.84■□□□□ 0.29
COL5A1P20908 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL5A1P20908 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL5A1P20908 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL5A1P20908 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL5A1P20908 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
COL5A1P20908 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
COL5A1P20908 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC16.84■□□□□ 0.29
COL5A1P20908 TMED1-207ENST00000591695 809 ntTSL 5 BASIC16.84■□□□□ 0.29
COL5A1P20908 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.84■□□□□ 0.29
COL5A1P20908 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL5A1P20908 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
COL5A1P20908 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
COL5A1P20908 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.83■□□□□ 0.29
COL5A1P20908 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.29
COL5A1P20908 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.83■□□□□ 0.29
COL5A1P20908 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC16.83■□□□□ 0.29
COL5A1P20908 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.29
COL5A1P20908 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC16.83■□□□□ 0.29
COL5A1P20908 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC16.83■□□□□ 0.29
COL5A1P20908 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.29
COL5A1P20908 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.29
COL5A1P20908 AC097637.2-201ENST00000624096 1997 ntBASIC16.83■□□□□ 0.29
COL5A1P20908 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL5A1P20908 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL5A1P20908 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL5A1P20908 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
COL5A1P20908 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL5A1P20908 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL5A1P20908 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL5A1P20908 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL5A1P20908 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
COL5A1P20908 IGHV3-52-201ENST00000519770 353 ntBASIC16.83■□□□□ 0.28
COL5A1P20908 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC16.83■□□□□ 0.28
COL5A1P20908 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC16.83■□□□□ 0.28
COL5A1P20908 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL5A1P20908 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL5A1P20908 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL5A1P20908 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC16.83■□□□□ 0.28
COL5A1P20908 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
COL5A1P20908 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL5A1P20908 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
COL5A1P20908 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC16.83■□□□□ 0.28
COL5A1P20908 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL5A1P20908 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL5A1P20908 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL5A1P20908 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
COL5A1P20908 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC16.83■□□□□ 0.28
COL5A1P20908 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL5A1P20908 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC16.82■□□□□ 0.28
COL5A1P20908 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL5A1P20908 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL5A1P20908 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL5A1P20908 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL5A1P20908 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL5A1P20908 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
COL5A1P20908 NEK7-201ENST00000367383 586 ntTSL 2 BASIC16.82■□□□□ 0.28
COL5A1P20908 PTCHD3P3-201ENST00000403073 906 ntBASIC16.82■□□□□ 0.28
COL5A1P20908 COX20P2-201ENST00000452636 358 ntBASIC16.82■□□□□ 0.28
COL5A1P20908 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC16.82■□□□□ 0.28
COL5A1P20908 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL5A1P20908 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
COL5A1P20908 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL5A1P20908 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
COL5A1P20908 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
COL5A1P20908 AC116407.2-201ENST00000613639 860 ntBASIC16.82■□□□□ 0.28
COL5A1P20908 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL5A1P20908 AL096828.2-201ENST00000567259 1965 ntBASIC16.82■□□□□ 0.28
COL5A1P20908 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
COL5A1P20908 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
COL5A1P20908 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
COL5A1P20908 HARS-201ENST00000307633 1780 ntTSL 2 BASIC16.82■□□□□ 0.28
COL5A1P20908 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC16.82■□□□□ 0.28
COL5A1P20908 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC16.82■□□□□ 0.28
COL5A1P20908 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC16.82■□□□□ 0.28
COL5A1P20908 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC16.82■□□□□ 0.28
COL5A1P20908 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms