Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HMGA1P17096 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
HMGA1P17096 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGA1P17096 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
HMGA1P17096 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGA1P17096 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
HMGA1P17096 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGA1P17096 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
HMGA1P17096 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HMGA1P17096 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGA1P17096 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGA1P17096 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC18.28■□□□□ 0.52
HMGA1P17096 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.28■□□□□ 0.52
HMGA1P17096 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HMGA1P17096 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGA1P17096 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC18.28■□□□□ 0.52
HMGA1P17096 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC18.28■□□□□ 0.52
HMGA1P17096 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC18.28■□□□□ 0.52
HMGA1P17096 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC18.28■□□□□ 0.52
HMGA1P17096 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC18.28■□□□□ 0.52
HMGA1P17096 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC18.28■□□□□ 0.52
HMGA1P17096 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
HMGA1P17096 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC18.28■□□□□ 0.52
HMGA1P17096 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGA1P17096 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGA1P17096 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGA1P17096 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGA1P17096 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
HMGA1P17096 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGA1P17096 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HMGA1P17096 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HMGA1P17096 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
HMGA1P17096 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.28■□□□□ 0.52
HMGA1P17096 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.28■□□□□ 0.52
HMGA1P17096 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.28■□□□□ 0.52
HMGA1P17096 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC18.28■□□□□ 0.52
HMGA1P17096 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC18.28■□□□□ 0.52
HMGA1P17096 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC18.28■□□□□ 0.52
HMGA1P17096 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HMGA1P17096 AC097637.2-201ENST00000624096 1997 ntBASIC18.28■□□□□ 0.52
HMGA1P17096 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
HMGA1P17096 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HMGA1P17096 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
HMGA1P17096 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HMGA1P17096 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HMGA1P17096 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HMGA1P17096 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HMGA1P17096 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HMGA1P17096 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HMGA1P17096 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC18.27■□□□□ 0.52
HMGA1P17096 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HMGA1P17096 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HMGA1P17096 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HMGA1P17096 SLC4A1APP2-201ENST00000424054 1259 ntBASIC18.27■□□□□ 0.52
HMGA1P17096 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC18.27■□□□□ 0.52
HMGA1P17096 HS6ST1P1-201ENST00000481504 1234 ntBASIC18.27■□□□□ 0.52
HMGA1P17096 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC18.27■□□□□ 0.52
HMGA1P17096 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC18.27■□□□□ 0.52
HMGA1P17096 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HMGA1P17096 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC18.27■□□□□ 0.51
HMGA1P17096 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
HMGA1P17096 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
HMGA1P17096 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
HMGA1P17096 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
HMGA1P17096 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC18.27■□□□□ 0.51
HMGA1P17096 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
HMGA1P17096 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGA1P17096 AL354751.1-201ENST00000412768 1863 ntBASIC18.26■□□□□ 0.51
HMGA1P17096 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGA1P17096 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGA1P17096 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HMGA1P17096 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HMGA1P17096 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
HMGA1P17096 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
HMGA1P17096 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HMGA1P17096 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HMGA1P17096 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGA1P17096 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGA1P17096 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
HMGA1P17096 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC18.26■□□□□ 0.51
HMGA1P17096 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC18.26■□□□□ 0.51
HMGA1P17096 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC18.26■□□□□ 0.51
HMGA1P17096 RPS15P9-201ENST00000494093 319 ntBASIC18.26■□□□□ 0.51
HMGA1P17096 IGHV3-65-201ENST00000523210 341 ntBASIC18.26■□□□□ 0.51
HMGA1P17096 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC18.26■□□□□ 0.51
HMGA1P17096 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC18.26■□□□□ 0.51
HMGA1P17096 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HMGA1P17096 AL353135.1-201ENST00000606729 504 ntBASIC18.26■□□□□ 0.51
HMGA1P17096 AC008667.4-201ENST00000607370 168 ntBASIC18.26■□□□□ 0.51
HMGA1P17096 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGA1P17096 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC18.26■□□□□ 0.51
HMGA1P17096 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
HMGA1P17096 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.26■□□□□ 0.51
HMGA1P17096 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGA1P17096 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGA1P17096 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC18.26■□□□□ 0.51
HMGA1P17096 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HMGA1P17096 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HMGA1P17096 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HMGA1P17096 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms