Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
TOP3BO95985 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TOP3BO95985 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TOP3BO95985 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.16■□□□□ 0.5
TOP3BO95985 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
TOP3BO95985 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC18.16■□□□□ 0.5
TOP3BO95985 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
TOP3BO95985 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TOP3BO95985 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TOP3BO95985 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.16■□□□□ 0.5
TOP3BO95985 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TOP3BO95985 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TOP3BO95985 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TOP3BO95985 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TOP3BO95985 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.15■□□□□ 0.5
TOP3BO95985 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
TOP3BO95985 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TOP3BO95985 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
TOP3BO95985 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TOP3BO95985 AL163051.1-201ENST00000569214 1512 ntBASIC18.15■□□□□ 0.5
TOP3BO95985 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TOP3BO95985 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC18.15■□□□□ 0.5
TOP3BO95985 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
TOP3BO95985 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
TOP3BO95985 HLA-F-220ENST00000434407 884 ntBASIC18.15■□□□□ 0.5
TOP3BO95985 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
TOP3BO95985 ABR-204ENST00000543210 1049 ntTSL 2 BASIC18.15■□□□□ 0.5
TOP3BO95985 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.15■□□□□ 0.5
TOP3BO95985 MIR3180-5-201ENST00000583743 153 ntBASIC18.15■□□□□ 0.5
TOP3BO95985 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.15■□□□□ 0.5
TOP3BO95985 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC18.15■□□□□ 0.5
TOP3BO95985 AL355385.1-201ENST00000606123 409 ntBASIC18.15■□□□□ 0.5
TOP3BO95985 AL157888.1-201ENST00000631930 593 ntBASIC18.15■□□□□ 0.5
TOP3BO95985 AC006116.8-202ENST00000587620 1550 ntBASIC18.15■□□□□ 0.5
TOP3BO95985 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC18.15■□□□□ 0.5
TOP3BO95985 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TOP3BO95985 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TOP3BO95985 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TOP3BO95985 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.15■□□□□ 0.5
TOP3BO95985 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
TOP3BO95985 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
TOP3BO95985 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
TOP3BO95985 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
TOP3BO95985 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TOP3BO95985 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TOP3BO95985 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TOP3BO95985 AC009053.2-201ENST00000563701 2365 ntBASIC18.15■□□□□ 0.5
TOP3BO95985 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
TOP3BO95985 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.5
TOP3BO95985 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
TOP3BO95985 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.5
TOP3BO95985 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TOP3BO95985 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TOP3BO95985 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
TOP3BO95985 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TOP3BO95985 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC18.14■□□□□ 0.49
TOP3BO95985 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC18.14■□□□□ 0.49
TOP3BO95985 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
TOP3BO95985 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.49
TOP3BO95985 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
TOP3BO95985 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
TOP3BO95985 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
TOP3BO95985 LINC01126-201ENST00000623515 1646 ntBASIC18.14■□□□□ 0.49
TOP3BO95985 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TOP3BO95985 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
TOP3BO95985 MIR662-201ENST00000384847 95 ntBASIC18.14■□□□□ 0.49
TOP3BO95985 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TOP3BO95985 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TOP3BO95985 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
TOP3BO95985 AF238378.1-201ENST00000526806 358 ntBASIC18.14■□□□□ 0.49
TOP3BO95985 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
TOP3BO95985 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC18.14■□□□□ 0.49
TOP3BO95985 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
TOP3BO95985 AL139424.1-201ENST00000607572 797 ntBASIC18.14■□□□□ 0.49
TOP3BO95985 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC18.14■□□□□ 0.49
TOP3BO95985 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TOP3BO95985 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.14■□□□□ 0.49
TOP3BO95985 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC18.14■□□□□ 0.49
TOP3BO95985 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TOP3BO95985 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
TOP3BO95985 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TOP3BO95985 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TOP3BO95985 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.14■□□□□ 0.49
TOP3BO95985 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.14■□□□□ 0.49
TOP3BO95985 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
TOP3BO95985 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TOP3BO95985 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TOP3BO95985 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TOP3BO95985 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC18.13■□□□□ 0.49
TOP3BO95985 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TOP3BO95985 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
TOP3BO95985 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TOP3BO95985 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
TOP3BO95985 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
TOP3BO95985 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
TOP3BO95985 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
TOP3BO95985 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
TOP3BO95985 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
TOP3BO95985 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
TOP3BO95985 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms