Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLDN9O95484 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
CLDN9O95484 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC17.14■□□□□ 0.33
CLDN9O95484 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLDN9O95484 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLDN9O95484 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CLDN9O95484 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CLDN9O95484 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC17.14■□□□□ 0.33
CLDN9O95484 RCN1P1-201ENST00000400413 996 ntBASIC17.14■□□□□ 0.33
CLDN9O95484 SPDYE13P-201ENST00000445314 798 ntBASIC17.14■□□□□ 0.33
CLDN9O95484 AL671277.2-201ENST00000458060 996 ntBASIC17.14■□□□□ 0.33
CLDN9O95484 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC17.14■□□□□ 0.33
CLDN9O95484 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.14■□□□□ 0.33
CLDN9O95484 LTBR-211ENST00000543190 785 ntTSL 3 BASIC17.14■□□□□ 0.33
CLDN9O95484 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC17.14■□□□□ 0.33
CLDN9O95484 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CLDN9O95484 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC17.14■□□□□ 0.33
CLDN9O95484 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
CLDN9O95484 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.14■□□□□ 0.33
CLDN9O95484 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLDN9O95484 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.14■□□□□ 0.33
CLDN9O95484 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.14■□□□□ 0.33
CLDN9O95484 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.14■□□□□ 0.33
CLDN9O95484 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLDN9O95484 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLDN9O95484 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
CLDN9O95484 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.14■□□□□ 0.33
CLDN9O95484 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.14■□□□□ 0.33
CLDN9O95484 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.14■□□□□ 0.33
CLDN9O95484 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.14■□□□□ 0.33
CLDN9O95484 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLDN9O95484 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CLDN9O95484 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLDN9O95484 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CLDN9O95484 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLDN9O95484 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CLDN9O95484 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CLDN9O95484 CROCCP2-202ENST00000412962 2773 ntBASIC17.13■□□□□ 0.33
CLDN9O95484 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.13■□□□□ 0.33
CLDN9O95484 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLDN9O95484 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLDN9O95484 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CLDN9O95484 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLDN9O95484 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.13■□□□□ 0.33
CLDN9O95484 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CLDN9O95484 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLDN9O95484 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLDN9O95484 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CLDN9O95484 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CLDN9O95484 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC17.13■□□□□ 0.33
CLDN9O95484 DUX4L26-201ENST00000489078 1255 ntBASIC17.13■□□□□ 0.33
CLDN9O95484 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CLDN9O95484 CLN6-204ENST00000564752 900 ntTSL 3 BASIC17.13■□□□□ 0.33
CLDN9O95484 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC17.13■□□□□ 0.33
CLDN9O95484 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC17.13■□□□□ 0.33
CLDN9O95484 CLN6-214ENST00000636314 442 ntTSL 3 BASIC17.13■□□□□ 0.33
CLDN9O95484 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLDN9O95484 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CLDN9O95484 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.13■□□□□ 0.33
CLDN9O95484 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLDN9O95484 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CLDN9O95484 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLDN9O95484 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
CLDN9O95484 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CLDN9O95484 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.13■□□□□ 0.33
CLDN9O95484 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CLDN9O95484 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CLDN9O95484 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CLDN9O95484 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.12■□□□□ 0.33
CLDN9O95484 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.12■□□□□ 0.33
CLDN9O95484 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLDN9O95484 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.12■□□□□ 0.33
CLDN9O95484 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
CLDN9O95484 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CLDN9O95484 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.12■□□□□ 0.33
CLDN9O95484 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CLDN9O95484 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
CLDN9O95484 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLDN9O95484 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.12■□□□□ 0.33
CLDN9O95484 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLDN9O95484 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLDN9O95484 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLDN9O95484 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLDN9O95484 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
CLDN9O95484 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC17.12■□□□□ 0.33
CLDN9O95484 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC17.12■□□□□ 0.33
CLDN9O95484 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC17.12■□□□□ 0.33
CLDN9O95484 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC17.12■□□□□ 0.33
CLDN9O95484 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
CLDN9O95484 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC17.12■□□□□ 0.33
CLDN9O95484 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLDN9O95484 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CLDN9O95484 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLDN9O95484 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CLDN9O95484 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLDN9O95484 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CLDN9O95484 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLDN9O95484 UBC-206ENST00000538617 1303 ntTSL 5 BASIC17.12■□□□□ 0.33
CLDN9O95484 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CLDN9O95484 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms