Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PRPF40AO75400 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
PRPF40AO75400 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PRPF40AO75400 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PRPF40AO75400 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
PRPF40AO75400 CRYGFP-201ENST00000418459 633 ntBASIC20.62■□□□□ 0.89
PRPF40AO75400 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC20.62■□□□□ 0.89
PRPF40AO75400 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PRPF40AO75400 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC20.62■□□□□ 0.89
PRPF40AO75400 AC009065.1-201ENST00000564055 1225 ntBASIC20.62■□□□□ 0.89
PRPF40AO75400 AP000525.1-201ENST00000608286 694 ntBASIC20.62■□□□□ 0.89
PRPF40AO75400 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC20.62■□□□□ 0.89
PRPF40AO75400 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PRPF40AO75400 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC20.62■□□□□ 0.89
PRPF40AO75400 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
PRPF40AO75400 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
PRPF40AO75400 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC20.62■□□□□ 0.89
PRPF40AO75400 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
PRPF40AO75400 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
PRPF40AO75400 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PRPF40AO75400 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC20.61■□□□□ 0.89
PRPF40AO75400 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC20.61■□□□□ 0.89
PRPF40AO75400 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC20.61■□□□□ 0.89
PRPF40AO75400 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC20.61■□□□□ 0.89
PRPF40AO75400 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PRPF40AO75400 CES3-203ENST00000543856 3178 ntTSL 2 BASIC20.61■□□□□ 0.89
PRPF40AO75400 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC20.61■□□□□ 0.89
PRPF40AO75400 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PRPF40AO75400 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC20.61■□□□□ 0.89
PRPF40AO75400 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PRPF40AO75400 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PRPF40AO75400 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC20.61■□□□□ 0.89
PRPF40AO75400 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC20.61■□□□□ 0.89
PRPF40AO75400 AC009949.1-201ENST00000623048 1830 ntBASIC20.61■□□□□ 0.89
PRPF40AO75400 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
PRPF40AO75400 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
PRPF40AO75400 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
PRPF40AO75400 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC20.6■□□□□ 0.89
PRPF40AO75400 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
PRPF40AO75400 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PRPF40AO75400 AC022898.2-201ENST00000616822 1312 ntBASIC20.6■□□□□ 0.89
PRPF40AO75400 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PRPF40AO75400 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
PRPF40AO75400 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
PRPF40AO75400 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
PRPF40AO75400 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC20.6■□□□□ 0.89
PRPF40AO75400 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC20.6■□□□□ 0.89
PRPF40AO75400 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PRPF40AO75400 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PRPF40AO75400 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC20.6■□□□□ 0.89
PRPF40AO75400 GLDC-219ENST00000640208 420 ntTSL 2 BASIC20.6■□□□□ 0.89
PRPF40AO75400 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PRPF40AO75400 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
PRPF40AO75400 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
PRPF40AO75400 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC20.6■□□□□ 0.89
PRPF40AO75400 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC20.6■□□□□ 0.89
PRPF40AO75400 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PRPF40AO75400 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PRPF40AO75400 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC20.6■□□□□ 0.89
PRPF40AO75400 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PRPF40AO75400 AC060834.1-201ENST00000443027 2032 ntBASIC20.6■□□□□ 0.89
PRPF40AO75400 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
PRPF40AO75400 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PRPF40AO75400 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC20.59■□□□□ 0.89
PRPF40AO75400 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC20.59■□□□□ 0.89
PRPF40AO75400 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
PRPF40AO75400 AC046158.3-201ENST00000624947 2558 ntBASIC20.59■□□□□ 0.89
PRPF40AO75400 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
PRPF40AO75400 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC20.59■□□□□ 0.89
PRPF40AO75400 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC20.59■□□□□ 0.89
PRPF40AO75400 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
PRPF40AO75400 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
PRPF40AO75400 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PRPF40AO75400 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PRPF40AO75400 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
PRPF40AO75400 MIR1238-201ENST00000408483 83 ntBASIC20.59■□□□□ 0.89
PRPF40AO75400 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PRPF40AO75400 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC20.59■□□□□ 0.89
PRPF40AO75400 AP003041.3-201ENST00000527151 707 ntBASIC20.59■□□□□ 0.89
PRPF40AO75400 WWOX-216ENST00000569818 525 ntBASIC20.59■□□□□ 0.89
PRPF40AO75400 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.59■□□□□ 0.89
PRPF40AO75400 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC20.59■□□□□ 0.89
PRPF40AO75400 AC112497.1-201ENST00000624824 639 ntBASIC20.59■□□□□ 0.89
PRPF40AO75400 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PRPF40AO75400 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PRPF40AO75400 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
PRPF40AO75400 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
PRPF40AO75400 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
PRPF40AO75400 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC20.59■□□□□ 0.89
PRPF40AO75400 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC20.59■□□□□ 0.89
PRPF40AO75400 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PRPF40AO75400 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PRPF40AO75400 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PRPF40AO75400 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
PRPF40AO75400 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC20.58■□□□□ 0.89
PRPF40AO75400 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
PRPF40AO75400 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PRPF40AO75400 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PRPF40AO75400 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PRPF40AO75400 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC20.58■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms