Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC22.26■■□□□ 1.15
NPHP1O15259 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC22.26■■□□□ 1.15
NPHP1O15259 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
NPHP1O15259 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
NPHP1O15259 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
NPHP1O15259 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
NPHP1O15259 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC22.26■■□□□ 1.15
NPHP1O15259 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
NPHP1O15259 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
NPHP1O15259 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
NPHP1O15259 AC005829.1-201ENST00000570002 483 ntBASIC22.26■■□□□ 1.15
NPHP1O15259 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC22.26■■□□□ 1.15
NPHP1O15259 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC22.26■■□□□ 1.15
NPHP1O15259 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC22.26■■□□□ 1.15
NPHP1O15259 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC22.26■■□□□ 1.15
NPHP1O15259 AC073592.5-201ENST00000624854 528 ntBASIC22.26■■□□□ 1.15
NPHP1O15259 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
NPHP1O15259 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
NPHP1O15259 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC22.26■■□□□ 1.15
NPHP1O15259 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
NPHP1O15259 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC22.26■■□□□ 1.15
NPHP1O15259 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC22.26■■□□□ 1.15
NPHP1O15259 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP1O15259 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP1O15259 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP1O15259 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
NPHP1O15259 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC22.25■■□□□ 1.15
NPHP1O15259 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP1O15259 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP1O15259 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP1O15259 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC22.25■■□□□ 1.15
NPHP1O15259 CRYGEP-201ENST00000412192 528 ntBASIC22.25■■□□□ 1.15
NPHP1O15259 SPDYE21P-201ENST00000413323 827 ntBASIC22.25■■□□□ 1.15
NPHP1O15259 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP1O15259 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
NPHP1O15259 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP1O15259 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP1O15259 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC22.25■■□□□ 1.15
NPHP1O15259 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
NPHP1O15259 KRT18P28-201ENST00000453838 1332 ntBASIC22.25■■□□□ 1.15
NPHP1O15259 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP1O15259 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP1O15259 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP1O15259 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
NPHP1O15259 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC22.25■■□□□ 1.15
NPHP1O15259 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
NPHP1O15259 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
NPHP1O15259 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
NPHP1O15259 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC22.24■■□□□ 1.15
NPHP1O15259 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
NPHP1O15259 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC22.24■■□□□ 1.15
NPHP1O15259 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC22.24■■□□□ 1.15
NPHP1O15259 AC073621.1-201ENST00000392730 636 ntBASIC22.24■■□□□ 1.15
NPHP1O15259 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC22.24■■□□□ 1.15
NPHP1O15259 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC22.24■■□□□ 1.15
NPHP1O15259 AC096633.1-201ENST00000422446 749 ntBASIC22.24■■□□□ 1.15
NPHP1O15259 AC103564.2-201ENST00000432853 1299 ntBASIC22.24■■□□□ 1.15
NPHP1O15259 METTL21AP1-201ENST00000438852 635 ntBASIC22.24■■□□□ 1.15
NPHP1O15259 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
NPHP1O15259 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC22.24■■□□□ 1.15
NPHP1O15259 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC22.24■■□□□ 1.15
NPHP1O15259 AD001527.2-201ENST00000622994 785 ntBASIC22.24■■□□□ 1.15
NPHP1O15259 AC073592.4-201ENST00000623827 446 ntBASIC22.24■■□□□ 1.15
NPHP1O15259 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC22.24■■□□□ 1.15
NPHP1O15259 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
NPHP1O15259 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC22.24■■□□□ 1.15
NPHP1O15259 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
NPHP1O15259 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC22.24■■□□□ 1.15
NPHP1O15259 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC22.24■■□□□ 1.15
NPHP1O15259 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
NPHP1O15259 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
NPHP1O15259 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
NPHP1O15259 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
NPHP1O15259 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
NPHP1O15259 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
NPHP1O15259 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC22.23■■□□□ 1.15
NPHP1O15259 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC22.23■■□□□ 1.15
NPHP1O15259 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC22.23■■□□□ 1.15
NPHP1O15259 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
NPHP1O15259 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
NPHP1O15259 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
NPHP1O15259 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
NPHP1O15259 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC22.23■■□□□ 1.15
NPHP1O15259 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
NPHP1O15259 PRYP5-201ENST00000451909 266 ntBASIC22.23■■□□□ 1.15
NPHP1O15259 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
NPHP1O15259 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC22.23■■□□□ 1.15
NPHP1O15259 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC22.23■■□□□ 1.15
NPHP1O15259 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC22.23■■□□□ 1.15
NPHP1O15259 LINC02084-201ENST00000606069 1096 ntBASIC22.23■■□□□ 1.15
NPHP1O15259 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC22.23■■□□□ 1.15
NPHP1O15259 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
NPHP1O15259 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC22.23■■□□□ 1.15
NPHP1O15259 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
NPHP1O15259 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
NPHP1O15259 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC22.23■■□□□ 1.15
NPHP1O15259 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
NPHP1O15259 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC22.23■■□□□ 1.15
NPHP1O15259 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC22.23■■□□□ 1.15
NPHP1O15259 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 64 ms