Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 HLA-J-201ENST00000462773 1622 ntBASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 KRT8P47-201ENST00000604727 1398 ntBASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CPSF4LA6NMK7 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CPSF4LA6NMK7 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CPSF4LA6NMK7 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC16.36■□□□□ 0.21
CPSF4LA6NMK7 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
CPSF4LA6NMK7 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CPSF4LA6NMK7 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC16.36■□□□□ 0.21
CPSF4LA6NMK7 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CPSF4LA6NMK7 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CPSF4LA6NMK7 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CPSF4LA6NMK7 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CPSF4LA6NMK7 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
CPSF4LA6NMK7 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CPSF4LA6NMK7 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC16.36■□□□□ 0.21
CPSF4LA6NMK7 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC16.36■□□□□ 0.21
CPSF4LA6NMK7 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC16.36■□□□□ 0.21
CPSF4LA6NMK7 TEN1-204ENST00000588202 862 ntTSL 3 BASIC16.36■□□□□ 0.21
CPSF4LA6NMK7 AC004263.2-201ENST00000617183 678 ntBASIC16.36■□□□□ 0.21
CPSF4LA6NMK7 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CPSF4LA6NMK7 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.36■□□□□ 0.21
CPSF4LA6NMK7 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.36■□□□□ 0.21
CPSF4LA6NMK7 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.36■□□□□ 0.21
CPSF4LA6NMK7 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CPSF4LA6NMK7 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CPSF4LA6NMK7 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CPSF4LA6NMK7 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
CPSF4LA6NMK7 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
CPSF4LA6NMK7 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CPSF4LA6NMK7 KRT89P-201ENST00000620027 1478 ntBASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 REXO1L11P-201ENST00000620964 1927 ntBASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 SPDYE15P-201ENST00000424157 909 ntBASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 KRT18P48-201ENST00000434763 852 ntBASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 AC009053.2-201ENST00000563701 2365 ntBASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 MED29-202ENST00000594368 1471 ntTSL 2 BASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CPSF4LA6NMK7 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 GXYLT1P3-201ENST00000453058 1193 ntBASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC16.34■□□□□ 0.21
CPSF4LA6NMK7 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms