Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CLCF1Q9UBD9 AC104581.1-202ENST00000635932 2618 ntBASIC15.75■□□□□ 0.11
CLCF1Q9UBD9 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CLCF1Q9UBD9 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
CLCF1Q9UBD9 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
CLCF1Q9UBD9 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC15.75■□□□□ 0.11
CLCF1Q9UBD9 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 STK4-201ENST00000372801 2038 ntTSL 2 BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 AC009949.1-201ENST00000623048 1830 ntBASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 AL590627.1-203ENST00000421194 1026 ntBASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 PNMT-203ENST00000581428 677 ntTSL 2 BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 NKAPP1-205ENST00000585790 367 ntBASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 AL049840.3-201ENST00000602669 611 ntBASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 AC025062.2-201ENST00000605477 670 ntBASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 ABBA01031661.1-201ENST00000634362 1253 ntBASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
CLCF1Q9UBD9 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 KRT18P55-202ENST00000578578 1546 ntBASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 BX276092.7-203ENST00000637198 1536 ntBASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 AL353593.2-201ENST00000602529 1483 ntBASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 SIRPAP1-201ENST00000448467 1770 ntBASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 RAB17-203ENST00000409576 466 ntTSL 3 BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 AC093909.1-201ENST00000504731 1122 ntBASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 SIGLEC16-201ENST00000599858 1437 ntBASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 AC243591.1-201ENST00000452967 1364 ntBASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CLCF1Q9UBD9 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms