Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 PRSS44-201ENST00000515154 1146 ntBASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 AC073648.6-201ENST00000641589 218 ntBASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
RPUSD4Q96CM3 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC14.15□□□□□ -0.15
RPUSD4Q96CM3 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
RPUSD4Q96CM3 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 AC106886.4-201ENST00000623557 2502 ntBASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 AC126755.1-201ENST00000525846 6405 ntBASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 HTR7P1-201ENST00000538670 1336 ntBASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC14.14□□□□□ -0.15
RPUSD4Q96CM3 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 AC004980.1-204ENST00000429707 299 ntBASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 KSR1P1-201ENST00000446298 240 ntBASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 ADM-205ENST00000528544 586 ntTSL 2 BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 PHGDH-209ENST00000641074 1780 ntBASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 AL355312.1-201ENST00000407115 2176 ntBASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 BOC-212ENST00000485230 2173 ntTSL 2 BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RPUSD4Q96CM3 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms