Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TTC28Q96AY4 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.79■□□□□ 0.44
TTC28Q96AY4 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
TTC28Q96AY4 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
TTC28Q96AY4 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.79■□□□□ 0.44
TTC28Q96AY4 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TTC28Q96AY4 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TTC28Q96AY4 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TTC28Q96AY4 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TTC28Q96AY4 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
TTC28Q96AY4 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TTC28Q96AY4 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TTC28Q96AY4 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
TTC28Q96AY4 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TTC28Q96AY4 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
TTC28Q96AY4 MFF-223ENST00000524634 647 ntTSL 2 BASIC17.78■□□□□ 0.44
TTC28Q96AY4 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC17.78■□□□□ 0.44
TTC28Q96AY4 AC103810.3-201ENST00000583567 96 ntBASIC17.78■□□□□ 0.44
TTC28Q96AY4 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC17.78■□□□□ 0.44
TTC28Q96AY4 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
TTC28Q96AY4 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC17.78■□□□□ 0.44
TTC28Q96AY4 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
TTC28Q96AY4 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.78■□□□□ 0.44
TTC28Q96AY4 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TTC28Q96AY4 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.78■□□□□ 0.44
TTC28Q96AY4 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC17.78■□□□□ 0.44
TTC28Q96AY4 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
TTC28Q96AY4 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC17.78■□□□□ 0.44
TTC28Q96AY4 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC17.78■□□□□ 0.44
TTC28Q96AY4 BNIP3P42-201ENST00000454982 569 ntBASIC17.78■□□□□ 0.44
TTC28Q96AY4 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC17.78■□□□□ 0.44
TTC28Q96AY4 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC17.78■□□□□ 0.44
TTC28Q96AY4 THTPA-204ENST00000554970 569 ntTSL 4 BASIC17.78■□□□□ 0.44
TTC28Q96AY4 THTPA-206ENST00000556015 535 ntTSL 3 BASIC17.78■□□□□ 0.44
TTC28Q96AY4 BNIP3P29-201ENST00000598302 571 ntBASIC17.78■□□□□ 0.44
TTC28Q96AY4 AC011447.5-201ENST00000616168 564 ntBASIC17.78■□□□□ 0.44
TTC28Q96AY4 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
TTC28Q96AY4 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC17.77■□□□□ 0.44
TTC28Q96AY4 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
TTC28Q96AY4 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC17.77■□□□□ 0.44
TTC28Q96AY4 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
TTC28Q96AY4 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
TTC28Q96AY4 TMEM14DP-201ENST00000422205 345 ntBASIC17.77■□□□□ 0.44
TTC28Q96AY4 AC027369.6-201ENST00000525520 931 ntBASIC17.77■□□□□ 0.44
TTC28Q96AY4 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC17.77■□□□□ 0.44
TTC28Q96AY4 FP475955.4-201ENST00000623131 1990 ntBASIC17.77■□□□□ 0.44
TTC28Q96AY4 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC17.77■□□□□ 0.44
TTC28Q96AY4 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
TTC28Q96AY4 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.77■□□□□ 0.44
TTC28Q96AY4 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
TTC28Q96AY4 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.44
TTC28Q96AY4 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
TTC28Q96AY4 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC17.77■□□□□ 0.43
TTC28Q96AY4 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
TTC28Q96AY4 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
TTC28Q96AY4 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
TTC28Q96AY4 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
TTC28Q96AY4 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC17.77■□□□□ 0.43
TTC28Q96AY4 PCDHAC2-203ENST00000615316 3011 ntBASIC17.77■□□□□ 0.43
TTC28Q96AY4 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
TTC28Q96AY4 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TTC28Q96AY4 AC099778.1-201ENST00000568593 1911 ntBASIC17.76■□□□□ 0.43
TTC28Q96AY4 AC007541.1-201ENST00000570282 1469 ntBASIC17.76■□□□□ 0.43
TTC28Q96AY4 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TTC28Q96AY4 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC17.76■□□□□ 0.43
TTC28Q96AY4 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
TTC28Q96AY4 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
TTC28Q96AY4 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TTC28Q96AY4 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TTC28Q96AY4 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.76■□□□□ 0.43
TTC28Q96AY4 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TTC28Q96AY4 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TTC28Q96AY4 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TTC28Q96AY4 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC17.76■□□□□ 0.43
TTC28Q96AY4 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TTC28Q96AY4 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
TTC28Q96AY4 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC17.76■□□□□ 0.43
TTC28Q96AY4 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TTC28Q96AY4 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TTC28Q96AY4 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.75■□□□□ 0.43
TTC28Q96AY4 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TTC28Q96AY4 AC005082.1-201ENST00000413042 2259 ntBASIC17.75■□□□□ 0.43
TTC28Q96AY4 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TTC28Q96AY4 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TTC28Q96AY4 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
TTC28Q96AY4 CD81-202ENST00000381036 880 ntTSL 3 BASIC17.75■□□□□ 0.43
TTC28Q96AY4 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC17.75■□□□□ 0.43
TTC28Q96AY4 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC17.75■□□□□ 0.43
TTC28Q96AY4 AC007389.4-201ENST00000454674 793 ntBASIC17.75■□□□□ 0.43
TTC28Q96AY4 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TTC28Q96AY4 AC133552.6-201ENST00000613406 534 ntBASIC17.75■□□□□ 0.43
TTC28Q96AY4 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC17.75■□□□□ 0.43
TTC28Q96AY4 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TTC28Q96AY4 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
TTC28Q96AY4 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TTC28Q96AY4 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
TTC28Q96AY4 USP48-205ENST00000421625 2818 ntTSL 2 BASIC17.75■□□□□ 0.43
TTC28Q96AY4 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TTC28Q96AY4 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TTC28Q96AY4 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms